Gene detail

Gene detail information of Glyur000814s00023372.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33910.1	3.00E-93	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003608463.1	1.24E-174	Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula]
COG	YP_004686973.1	1.00E-27	prolyl 4-hydroxylase alpha subunit [Cupriavidus necator N-1]
Swissprot	tr\|Q8VZJ7\|P4H9_ARATH	1.00E-125	Probable prolyl 4-hydroxylase 9 (Precursor)
trEMBL	tr\|G7JCT5\|G7JCT5_MEDTR	5.00E-175	Prolyl 4-hydroxylase alpha-like protein {ECO:0000313\|EMBL:AES90660.1}

Sequence

Transcript Sequence

>Glyur000814s00023372.1
ATAAAAACAAGATGCTGACAGTGAGAGAAGACTCTTGTTAAGCTGCTTCTTCAACAGAACAAGCAACGACGTGCTCTGCAGTTTCGAGTTACTATTCCTGCAAGGGGGGGAAAAAACGCAAAACTCTCCAGAATCTAAATGAAAACCAAAACGGTAAAAGGAAATTGGAGCTTGAGGACGAACAAGCTCGGCTTCCCTTACGTATTCCTCATATGCATCTTCTTCTTCCTTGCTGGATTCTTCGGTTCTGCTCTCTTCTCTCACTCTCAGGACGATGGACATGGCCTGAGGCCGAGACCGAGACCGAGGCTGCTTGAATCGACGACTGAGGCGAAGTACAATTTGATGTCTGCGGGAGAGTCTGGTGATGATTCCATCACATCGATTCCGTTTCAGGTTTTGAGCTGGAAGCCTCGAGCTCTGTATTTTCCCAATTTTGCAACCGCTGGACAATGTGAAAGCATAGTTGATATAGCAAAGGCAGGCCTCAAACCATCAGGTTTGGCCTTACGCAAGGGAGAAAATGAGGAGAATACCAAGGGAATTAGAACAAGCTCTGGTGTGTTTATTAGTGCTTCTGAGGATAAAACAGGGATTTTAGGTGTCATTGAGGAGAAAATTGCAAGAGCAACGATGATTCCTAGGAGTCATGGAGAGGCATTTAATATCCTACGCTATGAGGTTGGTCAAAGATATAATTCTCATTATGACGCATTCAATCCTGCTGAATATGGCCCACAAAAGAGCCAAAGGGAAGGTGGCGAGACTATGTTTCCATTTGAGAATGGTTTAAACATGGATGGTAGCTACGGGTATGAAGACTGCATTGGTTTAAAAGTAAGACCACGAATGGGGGATGGACTCCTATTTTATTCATTGCTCCCCAACAGCACAATCGATCCGACATCACTCCATGGGAGCTGCCCTGTGATAAAAGGGGAGAAGTGGGTGGCTACGAAGTGGATAAGGGATCAAGAACTGGATGATTAGAAAATTGGAACCNGCAATTGAGATTATGTCTCTTTTATAGGGTCATTATCTGCCGAACATTGTAATTTATGGGTCAGATGAATAATCAAGGGAAAATTTTCATCAGATGCTCAAACTGTATAACTAGAGTGCAGATTTTGCCATTTTGGTAGAGTATGCAGCGACTGATATAGCTGGAATTAAATTAAGTGGCCCCATTGGCCCCTACTTTTCGACCCCTTTTTTAGAAAGGAAAAAAAAACCCCACTGATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00814	77083	82536	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000814s00023372.1	PF03171.15	2OG-FeII_Oxy	173	277	4.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.670
SRR1783600	control	50.099
SRR1783602	moderate drought stress	33.990
SRR1811619	moderate drought stress	34.080

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	80.156
DRR006520	Root Summer glycyrrhizin high producing strain	81.031
DRR006521	Root Winter glycyrrhizin high producing strain	41.686
DRR006522	Root Winter glycyrrhizin high producing strain	40.121
DRR006523	Root Summer glycyrrhizin low producing strain	86.150
DRR006524	Root Summer glycyrrhizin low producing strain	85.784
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.417
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.571

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.751
SRR2868004	Drought Stress (root)	36.542
SRR2967015	Control (root)	34.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.383
SRR9715740	Leaf	32.369
SRR9715741	Leaf	38.614
SRR9715739	Root	17.083
SRR9715742	Root	39.467
SRR9715743	Root	34.407

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.006
SRR8749028	MeJA induced 9h	27.632
SRR8749029	MeJA induced 9h	34.022
SRR8749030	Uninduced	27.222
SRR8749031	Uninduced	12.081
SRR8749032	Uninduced	11.866

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.608
SRR8400027	Control - Root	59.656