Gene detail

Gene detail information of Glyur000814s00023359

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37470.1	7.00E-130	alpha/beta-Hydrolases superfamily protein
NR	XP_003608457.1	0	Sigma factor sigB regulation protein rsbQ [Medicago truncatula]
COG	YP_007142317.1	2.00E-78	alpha/beta fold family hydrolase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9SZU7\|KAI2_ARATH	6.00E-164	Probable esterase KAI2
trEMBL	tr\|G7JCS9\|G7JCS9_MEDTR	0	Sigma factor sigb regulation rsbq-like protein {ECO:0000313\|EMBL:AES90654.1}

Sequence

Transcript Sequence

>Glyur000814s00023359.1
TCAGCTTNCCAAATTAAGTGGCACCTTAAACTGATAGGTTTGGTTCTTCTCCTCTCCGTTGCCGTCAGTCNGAGCCTTCTTAATTCTTATATATATAGGTCCAAATATGATTATATGACGACGAGGTCTGAAACTTTCGAAGCCTGAAAGTCACAATCACAAACAACGCGTCGAGCCTCCCAAGTCCTGTTAAGCAAAGCAAAGAGAGTCAGCGCATAACAGAAAGAAAGAAAGAAAGAAAGAAAGAGGGGACAAAGTTAGTTACTAGCTAATCAACAGAACAAAACAAAATATGGGTATAGTAGAAGAAGCTCACAATGTGAAAGTTTTGGGATCAGGCGCGCGGTACATAGTTCTGGCTCACGGGTTTGGCACGGACCAATCCGTGTGGAAACACCTCGTACCCCATCTCCTCGACGAGTTCCGTGTCATNCTCTACGACAACATGGGAGCCGGTACCACCAACCCCGATTACTTCGATTTTGACCGCTACTCCACCTTACAAGGCTACGCCTACGACTTGCTCGCCATCTTAGAAGAGCTTCGAGTCGATTCCTGCATCTTTGTCGGTCACTCAGTCTCTGCTATGATCGGTACCATCGCTTCAATTTCTCGCCCCGATCTNTTCGCCAAAATCATCATGATCTCCGCTTCCCCAAGGTATTTGAACGACAGGGATTACTTTGGAGGGTTTGAGCAGGATGAATTGGACCAGTTATTCGATGCGATGTCGGCGAATTACAAGGCGTGGTGTTCGGGGTTTGCTCCAATGGCGGTTGGAGGGGACATGGAGTCGGTGGCGGTGCAGGAATTCAGCAGAACGTTGTTCAATATGAGGCCAGACATAGCGCTGAGCGTGTTGCAGACAATTTTCCAAAGCGACATGAGGCAGATACTGTGCCTCGTCACCGTCCCCTGCCACATCATACAGAGCATGAAGGACTTGGCGGTTCCGGTGGTGGTGGCGGAGTACCTCCACCAACACATCGGCGGCGAGTCCGTCGTGGAGGTCATGTCGACGGAGGGTCATTTGCCGCAATTGAGCTCGCCTGATGTCGTTATTCCCGTGCTGCTCAAACACATTCGCCATGATATTGCGGCTTGACAACGGGTAATGGTGCGTCGTCGTGCGTGACTCTAGTATTGGGCTTTATTTTTTGGTCATATATTATTGGGCTTTNAATAAAATAAAAAGGCCAATAAAAAATTGAAAGAGGACAGTAACTTTTTCTTTTGTGNCCGTTTCGTATATGACCAAAGGGAAATGGGGTCGGCGACACATGTTTCCATCAAAGTACGGTGTATTAATGGTGTTAGTTGTATGTCATTAAATCGTGGCTACGTGATAGGTGAGTGATGCAATTTAATAGTCGTGGGCATAAAGTGTTGTTGTTATTGTCGCTGTACTACGGGCATGGGTGAAGTGTATAGCTAGTTATTAGCTCTTGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00814	47990	49716	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000814s00023359.1	PF12697.2	Abhydrolase_6	20	257	7.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.283
SRR1783600	control	25.437
SRR1783602	moderate drought stress	26.165
SRR1811619	moderate drought stress	26.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.707
DRR006520	Root Summer glycyrrhizin high producing strain	38.869
DRR006521	Root Winter glycyrrhizin high producing strain	31.573
DRR006522	Root Winter glycyrrhizin high producing strain	30.681
DRR006523	Root Summer glycyrrhizin low producing strain	30.519
DRR006524	Root Summer glycyrrhizin low producing strain	30.361
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.632

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.343
SRR2868004	Drought Stress (root)	55.455
SRR2967015	Control (root)	44.162

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.563
SRR9715740	Leaf	20.191
SRR9715741	Leaf	28.867
SRR9715739	Root	39.083
SRR9715742	Root	35.490
SRR9715743	Root	35.502

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.458
SRR8749028	MeJA induced 9h	2.840
SRR8749029	MeJA induced 9h	2.566
SRR8749030	Uninduced	3.430
SRR8749031	Uninduced	3.203
SRR8749032	Uninduced	4.880

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.956
SRR8400027	Control - Root	30.549