Gene detail

Gene detail information of Glyur000813s00029789

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24960.2	2.00E-37
NR	XP_004513956.1	0	PREDICTED: uncharacterized protein LOC101500085 isoform X2 [Cicer arietinum]
Swissprot	tr\|O82368\|Y2988_ARATH	4.00E-06	Uncharacterized protein At2g29880
trEMBL	tr\|A0A072UVU8\|A0A072UVU8_MEDTR	0	Myb/SANT-like DNA-binding domain protein {ECO:0000313\|EMBL:KEH33536.1}

Sequence

Transcript Sequence

>Glyur000813s00029789.1
ATGAGCAGTTCTGCACCATCTTTGGCCATTATAAATGACTCTATGCCTTGTGATGAGCCTATGGAGTTTGAAAGTGTCTGTCCAGTTAACTATGATGGCAATGTTAAGCAAATGAGGTGGACAAGTGATATGGACAGCTGTCTAAGTGCAACTCTTGTGCAGCAAATCAAACTCGCTGTTTTGGCTATCAATGAGAAGTTTAAGCTTTATTTGATAAAAGAACATATTAAGAACCGTCTTAAGACATGGAAGAAACAGTTTGATATTCTGAAAGAACTCCTGAGCCAGAGCGACTTTGAGTGGGATGAAAAACGAAAAATGGTCATTGCAGATGACTCTGTATGGAGTGAATATATTAAGATAAATCCTGATGCTCGGCTTCTTAAAGGACGGGTGATCAGAAACTATGAGGAACTGTGCATAATCATTGGTCACTGTGATCCATCAGATAGTTCCATCAGTGCTGTTCGTGCTAACGTGGGTATGACTAGAGATGATGATGTAATGGAAGCTCATGACAGAAATTACCATGGAACTGGCAATACAAAGGAAAAAGGAATGTGTGTGACATGGACTGATGAGATGGATCATTGCTTGACAGAGCTGCTAGTCAAGCAAGTAATGTTGGGAAACAAGCTTGAGAAAAATTTCAAGACCTCAGCTTATATAGCTACTCTAGCAGGTCTAAATGAGAGATTTGGCCTTAAGTTAACGGTAGAAAACATTAGAAGCCGGTTGAAAACATGGAAGAAACAGTATGGCCTTTTGAAGGAAATGCTCTCTCAAGGGGGATTTGAGTGGGATGTGGAACGTAAGATGGTTCTTGCAACTGACTCAAAATGGAATGAATACATAAAGAAACGTCCAGATGCTAAGCATTTGCGAGGCAAACGTATAGAGAACTACAATGAATTAGGTATGCTAGTCGGCAATGAGCAAGCAAGCGGAAATTGGTTGGAAGACTATGAGAGACTTGATGTAAATCTTATTCCAAACTCTGAAGGGCATGCTGAAACTCCAGAACTGATGTTAGCTAATGAAGAGCTGAGCCATGATATTGCAGCTAATGAAGAGATGAGCCATGATAACGCAGCCAATGAAGAGATGAGCCAAGATAATGCAAGCGACGAAGCACAGGGTTCATCCGAGCAAACAAGGGCAAGGCCTTCATCATCTTCGCATTCAAAGCAATTGCATCCATCGAAAAGGAGACGTACCGGCGATGTTATGCTACAAATGATGAGCGTTATGGCCACAGATATCAGTCGGATAGCTGATGCATTGACTGAAAGGAACAAAACAGTGTGCTTGGAGGAAGTGGTTGAGAAGGTGCAGAATATTCCTGGCTTTGACGATGATCTCATCATTGAATCTTGTGAATATTTATGTTTTGACGAGAAGAGGGCATTGATGTTTTTGAAATTAGATGAGAGGTTAAGGAAAAAGTGGTTGTTGAAACGATTGCGTGGTTATTAGTTATTAATGTTGTTAATTAGATCTTTGGATTCTTTCTTCTTAGCATGTTTTTAACTTGTTGTATCCCCTAGTTTAGGTTGTTACATTCTGTATAGAAACTAGAACTGAATGGAAACGGGAAAAAAAATTATGGAATGACAAGCTGCTTCAGCTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00813	17907	20071	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000813s00029789.1	PF12776.2	Myb_DNA-bind_3	61	118	4.30E-12
Glyur000813s00029789.1	PF12776.2	Myb_DNA-bind_3	191	284	1.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.090
SRR1783600	control	5.294
SRR1783602	moderate drought stress	5.726
SRR1811619	moderate drought stress	5.657

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.946
DRR006520	Root Summer glycyrrhizin high producing strain	18.285
DRR006521	Root Winter glycyrrhizin high producing strain	14.907
DRR006522	Root Winter glycyrrhizin high producing strain	13.239
DRR006523	Root Summer glycyrrhizin low producing strain	7.925
DRR006524	Root Summer glycyrrhizin low producing strain	7.372
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.523
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.957

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.598
SRR2868004	Drought Stress (root)	17.249
SRR2967015	Control (root)	16.824

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.342
SRR9715740	Leaf	5.309
SRR9715741	Leaf	8.497
SRR9715739	Root	0.695
SRR9715742	Root	5.166
SRR9715743	Root	4.372

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.313
SRR8749028	MeJA induced 9h	32.507
SRR8749029	MeJA induced 9h	26.881
SRR8749030	Uninduced	31.368
SRR8749031	Uninduced	22.522
SRR8749032	Uninduced	13.712

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.146
SRR8400027	Control - Root	8.137