Gene detail

Gene detail information of Glyur000812s00033045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62260.1	4.00E-38	AT hook motif DNA-binding family protein
NR	XP_006587383.1	2.24E-109	PREDICTED: uncharacterized protein LOC102667678 [Glycine max]
trEMBL	tr\|I1L3K5\|I1L3K5_SOYBN	8.00E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G28080.1}

Sequence

Transcript Sequence

>Glyur000812s00033045.1
ATGGAGGAAAGAGAGATTTTTAGTTCTGGGCATGCAGTTAAGGTTAACGTGGGCCCAGAGGGCTTCCACGTGGCCCAAAATTCCGTGCAGATTCCCGGGCCCACTGTATCTCCGGCACCGGCAACTTCTCCGGCGCCGGCGCCGGCGCCGATACCCGCTCGGGCAATCGCAACTGCTGGTAATACGGAGGGGAAGAAGAAGAGGGGTAGGCCTAGGAAGTATGAATCGGCCGGTAGGGCGGCGCTGTCGCCNGTGCCGATCTCGGCGTCGGTTCCGTTGACCGGAGATTACTCATCCTTGAAAAGGGGTGGAGGGAAGCCGTTTNAATCAAACATGAAGTCTTTTAAGTTTGATTTTGGAGGTGCAAGACCAGGTAATAAAAGGGATCAATACATGGTCGGTTCCAATTTCACACCTCATGTGATTAATGTAGATTCTGGCGAGGATATTACTATGAGAATTATGTCTTTCAATCAAGATGGACACCATGCTATATGCGTTCTCTCCGCAAATGGCCCGATTTCGAATGCTACAGTTTGTCAGCCGGCTTCTGCTGGTGGGACTAGGACATATGAGGGAATATTTGAGCTTATTTCCTTGTGTGGTTCGTTTGCGCCAGATGAGAATGGATTAGCAGATTGCAGAACTGGTGGGCTGAGCGTCTCTTTGGCGGGTGCAGATGGTCAACTTGTCGGGGGTGGACTGGCCGGTCTTCTGGTAGCTGCAGGTCCTGTGCAGGTTGTGTTGGGCAGTTTCATTGTGGAGGAGAAACCCAAGAAGCAGAGGGTGGAGAATGCATCAACATCTGCACCTCCACATGCTAACCTTACTTCTGCTGAGGAAATGAATAATGTGGGCCCTCTTGTTGGAATGAAGCCCATCATGACCCCATTTGGCCTTCAAGTGGACAACAACAACAACAACAACATTGCTCCTCCTTCTCTTAACAATGGTCAAGGCTCATCTAGGAGCATAACCCCACCAACCATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00812	99021	102930	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000812s00033045.1	PF02178.14	AT_hook	65	76	0.01
Glyur000812s00033045.1	PF03479.10	DUF296	137	254	2.10E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.171
SRR1783600	control	1.165
SRR1783602	moderate drought stress	0.856
SRR1811619	moderate drought stress	0.811

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.327
DRR006520	Root Summer glycyrrhizin high producing strain	0.324
DRR006521	Root Winter glycyrrhizin high producing strain	0.336
DRR006522	Root Winter glycyrrhizin high producing strain	0.217
DRR006523	Root Summer glycyrrhizin low producing strain	0.110
DRR006524	Root Summer glycyrrhizin low producing strain	0.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.092

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.639
SRR2868004	Drought Stress (root)	0.274
SRR2967015	Control (root)	0.640

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.930
SRR9715740	Leaf	0.032
SRR9715741	Leaf	2.222
SRR9715739	Root	6.137
SRR9715742	Root	2.525
SRR9715743	Root	2.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.924
SRR8749028	MeJA induced 9h	0.287
SRR8749029	MeJA induced 9h	0.869
SRR8749030	Uninduced	0.022
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.160
SRR8400027	Control - Root	3.104