Gene detail

Gene detail information of Glyur000812s00033043

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13410.1	5.00E-80	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_003621051.1	3.12E-153	Peptidyl-prolyl cis-trans isomerase-like protein [Medicago truncatula]
COG	YP_007169768.1	2.00E-16	Peptidylprolyl isomerase [Halothece sp. PCC 7418]
Swissprot	tr\|Q9LYR5\|FKB19_ARATH	1.00E-114	Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (Precursor)
trEMBL	tr\|G7KXR3\|G7KXR3_MEDTR	1.00E-153	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}

Sequence

Transcript Sequence

>Glyur000812s00033043.1
ATGGCGTCAATTTTGTCGTTATCCGTTGGTTCTCTTTCCCTCCCCAAATCTCAATCTCTGGATCCCGAGAGAGTCTCCGATTCCTCTCTCTCCGGCAAAAGCAACAATAGGAGTGGTAGTTGTTGTTCCGTGCCTTCGTTTGAACGGAGAAAGATTGTTCTCTCTTCCGTCGCCGTCATTGCCGGAACCTTGTGCAAGGGCGGAATCGCTCTGGCATCTGAATTTGCTGACATGCCAGCGCTTAGAGGGAAGGATTATGGCAAGACGAAAATGCGGTACCCAGACTACATAGAAACTGAATCGGGACTCCAATATAAGGACTTGCGACCAGGGACTGGTCCTAAACCAAAGATAGGAGAGACGGTTGTGGTAGACTGGGATGGCTACACCATAGGTTATTATGGCCGCATATTTGAAGCACGGAATAAAACAAAGGGTGGTTCCTTTGAGGGTGATGACAAGGACTTTTTCAAATTCAAAGTAGGATCTCAAGAGGTAATACCAGCTTTTGAAGAGGCTGTTTCAGGCATGGCTCTTGGGGGCGTTAGAAGGATAATTGTACCCCCGGAACTTGGATATCCTGAAAATGATTTCAACAAGAGTGGCCCAAGACCAACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTCGATATTGAGCTGTTGAAGATTATTCCAAACTGATTTTTGTCAAATTCTGCATTGACTCTGGAATATTGCCACCAGAACATTGAGATCATCATCTATGCCTTGCAAGTTGCAATCAGTTAGCTGAACGACAAAGATATGAATATTCCAAGCAGCTAGAGCTATAGCTCACTTAGATTTTCAATGCCTAGTCATGATATTCAATAGCTTGCTTTTGGCTGTAGACCTACGCCTACCTACTTCCAGAGGATATGAGGATGCAAACTTCGTCATGCAAACAATTGTCCTGTCCTATGGTCATTTTGTTAGCACTGACATTTGATGCTTGCGTTTGGGCTGGCTTTAATAACTGAAATATTTCTGGCNATTCTCCCCAGGAATATATAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00812	82453	88174	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000812s00033043.1	PF00254.23	FKBP_C	114	235	1.60E-19
Glyur000812s00033043.2	PF00254.23	FKBP_C	114	235	1.60E-19
Glyur000812s00033043.3	PF00254.23	FKBP_C	114	235	1.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.955
SRR1783600	control	7.802
SRR1783602	moderate drought stress	5.120
SRR1811619	moderate drought stress	4.917

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.786
DRR006520	Root Summer glycyrrhizin high producing strain	5.928
DRR006521	Root Winter glycyrrhizin high producing strain	7.026
DRR006522	Root Winter glycyrrhizin high producing strain	6.789
DRR006523	Root Summer glycyrrhizin low producing strain	6.434
DRR006524	Root Summer glycyrrhizin low producing strain	7.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.076
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.127

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.199
SRR2868004	Drought Stress (root)	6.026
SRR2967015	Control (root)	7.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.152
SRR9715740	Leaf	30.779
SRR9715741	Leaf	14.578
SRR9715739	Root	2.317
SRR9715742	Root	3.307
SRR9715743	Root	2.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.408
SRR8749028	MeJA induced 9h	6.643
SRR8749029	MeJA induced 9h	4.354
SRR8749030	Uninduced	3.163
SRR8749031	Uninduced	2.900
SRR8749032	Uninduced	1.967

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.648
SRR8400027	Control - Root	12.569