Gene detail

Gene detail information of Glyur000812s00033039

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G44960.1	7.00E-77	SNARE associated Golgi protein family
NR	XP_004489128.1	3.41E-138	PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Cicer arietinum]
COG	YP_007108168.1	4.00E-17	hypothetical protein GEI7407_0618 [Geitlerinema sp. PCC 7407]
trEMBL	tr\|G7KXT0\|G7KXT0_MEDTR	3.00E-135	SNARE associated family protein {ECO:0000313\|EMBL:AES77287.1}

Sequence

Transcript Sequence

>Glyur000812s00033039.1
GTTGCTGTCAAAAAAAAAAGTGGCACTGTTACAATATCACAAAAAAAAGTGGCAGAGTGTTACTGTTAGGTATTGTAGGTTTTGGGTTGTGAAGAAGGAAGGATCGAGGAGGAGGAGGAGGAGGGAGGAGCAGGAAATGGGGCGTTGGTGGTGGAAAGTGGCGGCGGTGGTGGGGATAGTGGCGGCGCTGAGAGTGTACGGAGTGGGAGGAGGGTGGGAGAAGGAATCGGCGGTGAGGTGGATGAGAGATTGGTCAGAGAGATTAGGGATTTGGGCAATCCCTCTCTTCATCTCACTCCACACTCTCTCCATCGCTCTCTGTCTCCCTTCTGCTATCTTCCTCGAAACCGGCGCCTCCATCCTCTTCGGTTTCCTCNCTTCCGTTCTCTGTGTCTTCTCCGCCAAGATCCTCGCTGCCTCTCTCTCCTTCTGGATCGGCAGGTTAGTATTCAGGAATTCAAGCTCAGCAATGAATTGGGCCCGAAGTAACAAATATTTTCATCTCCTTTCCAAAGGAGTTGAGCGAGACGGTTGGAAATTCGTTCTTCTTGCCCGCTTCTCACCCGTGCCGTCGTATATTATTAACTATACCTTAGCTGCTACCGAAGTTGGGTTCTTTTTGGATTTCCTTCTTCCTACTGTCGTTGGATGTGTCCCCATGATCTTGCAGAATACATCTATTGGAAGCCTTGCTGGTGCTGCTGTGGCTACAGCCTCTGGCTCTAAGAAATCTCAAATTTGGTCTTACTTTTTTCCTATAGTTGGTATTATATCTAGTGTACTTATTTCTTTGAGAATTAAAAAGTACTCATCCCAATTTTCAGTATCTGAAATCTCTTCCGGCAAAGATAACACTGCTGATAAGCAACAGTAACAAACCTTGTCTGGTAGTGAAGAGAGTGTCATTTATTTGATCTTGTTAGTATTAACTAACCTTTTTANGTGTCTTTTATTCCTATGAATGTTTTGTTATGATTTGATCTTCATTTAGTGTGGTAGTTGCACTCCATTTCGGTTNTGTAGACTTTGTTTGGGATTTTGTTGTAATACATTTGAAGCCTTTCTTTAGGCAGAGTAGTGGGTGGACCTATTCCTACACGAAAACTGCACATAAACTGTGCTGTGGGGTGATAGGTAAGTCTGGGTGGTACTGGTTGGTGGTCCTATGTGAACCGTGTTTCCACTAAGATACAGATCTAAGAGCCAGTGGTACAATTATGCAGCTTTGTGAATGGAAGGAGTGTGTTGTCTTTACGCTGTTTAGCATTACGAAATGTTTGAGTTCTGTTTAAAATCGATCCGACACCCACAATTACTGCTTTNAACCACGTTGTATGCTTCTACAAGTTACTTCATCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00812	4202	7585	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000812s00033039.1	PF09335.6	SNARE_assoc	63	185	4.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.746
SRR1783600	control	15.144
SRR1783602	moderate drought stress	26.160
SRR1811619	moderate drought stress	26.375

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.419
DRR006520	Root Summer glycyrrhizin high producing strain	20.834
DRR006521	Root Winter glycyrrhizin high producing strain	53.509
DRR006522	Root Winter glycyrrhizin high producing strain	53.257
DRR006523	Root Summer glycyrrhizin low producing strain	28.585
DRR006524	Root Summer glycyrrhizin low producing strain	28.867
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.142
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.953

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.173
SRR2868004	Drought Stress (root)	39.087
SRR2967015	Control (root)	34.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.158
SRR9715740	Leaf	12.861
SRR9715741	Leaf	13.377
SRR9715739	Root	33.091
SRR9715742	Root	23.695
SRR9715743	Root	23.577

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.421
SRR8749028	MeJA induced 9h	29.854
SRR8749029	MeJA induced 9h	24.649
SRR8749030	Uninduced	19.296
SRR8749031	Uninduced	8.783
SRR8749032	Uninduced	17.676

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.081
SRR8400027	Control - Root	27.868