Gene detail information of Glyur000811s00031137 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27830.1 | 7.00E-36 | ribosomal protein L12-A |
| NR | XP_004489259.1 | 8.79E-73 | PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cicer arietinum] |
| COG | YP_007149876.1 | 1.00E-29 | LSU ribosomal protein L12P [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|P02398|RK12_SPIOL | 4.00E-64 | 50S ribosomal protein L12, chloroplastic (Precursor) |
| trEMBL | tr|A0A067L3E5|A0A067L3E5_JATCU | 2.00E-64 | Uncharacterized protein {ECO:0000313|EMBL:KDP42952.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00811 | 91215 | 91778 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000811s00031137.1 | PF00542.14 | Ribosomal_L12 | 119 | 186 | 1.70E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 76.265 |
| SRR1783600 | control | 77.033 |
| SRR1783602 | moderate drought stress | 45.329 |
| SRR1811619 | moderate drought stress | 43.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 55.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.963 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.577 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1064.836 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1065.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 91.978 |
| SRR2868004 | Drought Stress (root) | 72.758 |
| SRR2967015 | Control (root) | 62.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1374.554 |
| SRR9715740 | Leaf | 1087.941 |
| SRR9715741 | Leaf | 775.309 |
| SRR9715739 | Root | 94.513 |
| SRR9715742 | Root | 87.601 |
| SRR9715743 | Root | 89.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.557 |
| SRR8749028 | MeJA induced 9h | 16.585 |
| SRR8749029 | MeJA induced 9h | 12.809 |
| SRR8749030 | Uninduced | 8.836 |
| SRR8749031 | Uninduced | 4.501 |
| SRR8749032 | Uninduced | 10.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 140.061 |
| SRR8400027 | Control - Root | 119.309 |