Gene detail

Gene detail information of Glyur000811s00031133

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14680.1	3.00E-31	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	XP_004489263.1	1.09E-42	PREDICTED: universal stress protein A-like protein-like [Cicer arietinum]
COG	YP_007102473.1	8.00E-11	UspA domain-containing protein [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	6.00E-37	Universal stress protein A-like protein
trEMBL	tr\|I1N5P1\|I1N5P1_SOYBN	6.00E-43	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G00950.1}

Sequence

Transcript Sequence

>Glyur000811s00031133.1
GAAAGAGTGGTCCAGTGCGCAGTTTAGCGAAACGTGGAGCGAATGATGGTAACATACGCGGGGGGTTATAAATAGTTGAAGCCTGAAGGGTGATTGAAAAATTGAAACAAAATAAAATCAATCAAATCGTTGAATAGTACTGAGTTGGACTCGGTGTTGCAGAAAGAAAAATAGACTCGGTGAGTGAGTGATGGAGGAGACTCAGGAGGTGACTCGGATAATGGTGGGAGTGAACGAGTCAAGCTTGAAGGGTTACCCNTTCCCTTCGATTAGTAGCAAAGGGGCTTTCGAATGGGCCTTAAACAAGATCGTTCGCAATAACGTCTCTGCTTTCAACCTTCTCTTTCTTCATGTTCAAGTCCCTGATGAAGATGGNTTTGATGACATGGATAGTATCTATGCATCGGCTGAAGATTTTAAGGACATGAAAGAGAGAGACAGGATTAGAGGGGTTCATCTTCTGGAATACTTCGTCAATAAGTGTAATGAAATTGGGGTGGCCTGTCAAGCATGGATAAAGCATGGTGATCCCAANGAAGTAATATTGCATGAAGTGAAACGGCTACGGCCAGATTTACTGGTTGTGGGTAGCCGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACTGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTGATTACTATCAAACGCAAGGCAGATGAAACTCCTCAGGACCCTGTTGATGACTAATATTTTGACATTGGAGATGGATTGAGACTGGTGTGATTACCACCTATGTTAGTTGAACTGAATAAAATGTCGAATATCATAAAGATTAGTCTATGGAGAGGGTTCAATGTGGCCTGTCAAGCATGGATAAAGCATGGTGATCCCAAAGAAGTAATATTGCATGAAGTGAAACGGCTACGGCCAGATTTACTGGTTGTGGGTAGCCGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACTGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTGATTACTATCAAACGCAAGGCAGATGAAACTCCTCAGGACCCTGTGAGCATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00811	64858	79962	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000811s00031133.1	PF00582.21	Usp	28	83	3.00E-14
Glyur000811s00031133.2	PF00582.21	Usp	25	164	3.10E-19
Glyur000811s00031133.3	PF00582.21	Usp	25	156	8.90E-18
Glyur000811s00031133.4	PF00582.21	Usp	25	156	8.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.945
SRR1783600	control	5.115
SRR1783602	moderate drought stress	6.366
SRR1811619	moderate drought stress	6.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.164
DRR006520	Root Summer glycyrrhizin high producing strain	10.722
DRR006521	Root Winter glycyrrhizin high producing strain	9.915
DRR006522	Root Winter glycyrrhizin high producing strain	9.666
DRR006523	Root Summer glycyrrhizin low producing strain	9.995
DRR006524	Root Summer glycyrrhizin low producing strain	9.908
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.742
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.942

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.554
SRR2868004	Drought Stress (root)	46.388
SRR2967015	Control (root)	39.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.862
SRR9715740	Leaf	43.414
SRR9715741	Leaf	41.418
SRR9715739	Root	18.999
SRR9715742	Root	17.573
SRR9715743	Root	19.069

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.477
SRR8749028	MeJA induced 9h	6.024
SRR8749029	MeJA induced 9h	3.753
SRR8749030	Uninduced	4.390
SRR8749031	Uninduced	1.356
SRR8749032	Uninduced	1.265

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.732
SRR8400027	Control - Root	37.054