Gene detail

Gene detail information of Glyur000811s00031132

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14700.1	7.00E-100	NAD(P)-binding Rossmann-fold superfamily protein
NR	KEH24813.1	0	cinnamoyl-CoA reductase [Medicago truncatula]
COG	YP_001517863.1	1.00E-20	NAD-dependent epimerase/dehydratase family protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q500U8\|TKPR1_ARATH	7.00E-34	Tetraketide alpha-pyrone reductase 1
trEMBL	tr\|A0A072U6Q4\|A0A072U6Q4_MEDTR	0	Cinnamoyl-CoA reductase {ECO:0000313\|EMBL:KEH24813.1}

Sequence

Transcript Sequence

>Glyur000811s00031132.1
ATAAACCCCATTTCCACCATAACCATATAGTAGAAGGAAAAAAAAAAAGTTTCTTTGATTGAGTTCACCTTCCAAACTCAAACAACATAAGCATAAATAACCCACCACACCCCAATATTCATTATTTTTCATATTCCTAAGTCCTAGCTTCATATATATCACCACATACTTCAAATTTGTCTTTTTCATTTTGCTATTGGAAATGGGTGTTGTACGCACGTGGGAGGGTAGGAGGGTGGAGATTGAGGCCTTTCGCCGGAATCTAGTGGCGGCCGCCGGCATCCACCGGAGAAAGGACGATGAGGGGTTGAGAAAAAACACCCCTTTTTGTTCTCCTTTTGAGGATGATGATGAAGGGACAACCTTGCTCTGTGTCACTAGTGGCGTTTCTTATTTGGGACTCGCCTTGGTCAACCAGCTTCTGCTCTTGGGTTACTCTGTTCGAGTCATTGTTGACAACCCAGAGGACATAGAGAAAGTGAGGGAAATGGAAAGTNTTACAACAGAACGCAATTTGGAAGTAGTAATGGCAAAGCTAACTGATATTGACAGCTTAGAGAAAGCATTTGAAGGATGTGGTGGCGTGTTTCACACCTCTGCTTTTACCGACCCTGCTGGCCTCTCTGGTTACACTAAATCCATGGCTGAGATTGAAGTCAGTGTAACCGAGAATGTGATGGAAGCATGTGCAAGAACACCTTCTATTCAAAGATGTGTGTTCACATCATCACTAGCTGCTTGTGTGTGGCAAGACAATGCACATTCAGACCTCTCTCCTTCTGTTATTAACCATGGCTCTTGGAGCACTGAATCACTCTGCATAGACAAAAAGCTATGGTATGCATTAGGGAAGATGAGGGCAGAGAAAGCTGCTTGGAGAATAGCTAGTGAAAGGGGTTTGAAGCTCACTACCATCTGTCCAGCTCTCATTACAGGTCCTGAATTTTGTCGTAGGAATCCAACAGCAACAATTGCTTATCTCAAAGGAGCACAAGAAATGTATTCTCATGGTTTGCTAGCAACAGTTGATGTAAAGAAAGTGGCAGAGGCTCATGCATGTGTATTCAAGGCAATGAATAGCAATGCTTCTGGTAGATACATTTGCTTTGATAATGTAATTGATGCTCAAAGTGAAGCAGAGAAGCTAGCCAAGGAGATTGGGATGCCTAAGGACAAAATATTATGTGGGGATGCATCAAACAGAGATCAACAAGAAGAAGAAGAGAAAGTACAAATGGATGAGAAGGGTTGTAGCAGTAGCAGCAGGGGAAATAATGGAGCCACCAACAGGAGGTTCGCCGCAACGGTGGACGACGGTGGAGGGGATTTGATAGAGTGTTCAGGCAAGTATTGCAGGTCATGCACAGCAGGGTTGATAGCTGACTGTGTGGCACTCTGTTGCTGCCCTTGTGCTGTGTTGCATTGCTTTGCCTTGGCTTTTGTTAAGGCACCCTGGGTTGTTGGAAGGAGGTGTTTGGGGTTGGGAAACAAAAACAAGAACAAGAACAACAAGGGTCACAAGAGGAAATGCACAAGGGGAAAGCATGATGTTGTTGATGATGTTGTTAATGTTGCTGCAAATGATGATGTTGGTGTTGGGGTAGTGTTGGAGAGGAGTAATAAGGAAGGGGGTTTAAGGGGTGGGTGGCCAGATTCTAATTCTAGTAGTGTTAATTCTGGGGTTGGTGGGGTGGCAGCATCACCAATGGACACTGTCAATGTCAGTGCTGGCTTTGAGGCAGAGAAGGTTTGGATGGAGCTTTATCAGATTGGTCATTTGGATTTTGGGAGGGTTTCTTTCTCAGGTGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00811	29748	39866	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006694 steroid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000811s00031132.1	PF01073.14	3Beta_HSD	58	296	7.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.977
SRR1783600	control	6.928
SRR1783602	moderate drought stress	6.126
SRR1811619	moderate drought stress	6.088

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.690
DRR006520	Root Summer glycyrrhizin high producing strain	9.555
DRR006521	Root Winter glycyrrhizin high producing strain	0.181
DRR006522	Root Winter glycyrrhizin high producing strain	0.153
DRR006523	Root Summer glycyrrhizin low producing strain	6.126
DRR006524	Root Summer glycyrrhizin low producing strain	6.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.763
SRR2868004	Drought Stress (root)	57.850
SRR2967015	Control (root)	40.855

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.396
SRR9715740	Leaf	10.722
SRR9715741	Leaf	19.039
SRR9715739	Root	5.186
SRR9715742	Root	11.472
SRR9715743	Root	10.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.317
SRR8749028	MeJA induced 9h	9.113
SRR8749029	MeJA induced 9h	3.175
SRR8749030	Uninduced	46.400
SRR8749031	Uninduced	17.519
SRR8749032	Uninduced	11.404

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.240
SRR8400027	Control - Root	17.878