Gene detail

Gene detail information of Glyur000811s00031130

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G27870.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_006603808.1	PREDICTED: putative phospholipid-transporting ATPase 8-like isoform X3 [Glycine max]
Swissprot	tr\|Q9LK90\|ALA8_ARATH	Putative phospholipid-transporting ATPase 8
trEMBL	tr\|I1N5P8\|I1N5P8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G01010.1}

Sequence

Transcript Sequence

>Glyur000811s00031130.1
ATGCCTGAAGGGGTTAAAAAAAGGATACATTTTAGCAAACTATACTCTTTTTCATGTTTGAGATCTCCATTTAGAGATGGCCATTCCCAGATTGGGCAGAAAGGGTACTCAAGGGTTGTTTACTGCAATGATCCTGATAACCCTGAAGCAATTCAGTTGAATTATGGGGGAAACTATGTTTCAACTACCAAGTACACTGCTTTCAATTTCATCCCAAAGTCTTTGTTTGAGCAGTTCAGAAGGGTTGCAAACATCTACTTCCTCATTGTTGCTTGTGTTTCATTTAGTCCCTTGGCACCTTTTACACCTCTAAGTATTGTTGCACCCTTGCTGCTTGTGATTGGAGCTACTATGGCCAAGGAAGCTGTGGAGGATTGGAGAAGGAGAAAACAGGATATAGAGGCAAACAACCGAAAGGTTCAGGTATATGGTAAAAACTATACATTTGTGGAGACTAGATGGAAGAAACTCCGCGTTGGTGATATCATTAAAGTGTATAAGGATGAATACTTTCCTTCTGATCTTCTTCTGCTTTCGTCAAGCTATGAGGATGGGGTTTGCTATGTTGAGACAATGAATCTCGATGGAGAAACTAATCTAAAATTGAAACATGCCTTGGAGGTGACAAGTCATCTTCATAATGAAAAATCTCTCCAAAAGTTTAGGGCTATGGTAAAATGTGAGGATCCTAATGAAAATCTATACTCATTTATTGGAACTTTACAATATGAGGGTAAAGAATATCCTCTTTCCTTGCAGCAGATCCTTTTAAGAGATTCTAAGCTGAAAAACACTGAATATATCTATGGTGTTGTTATCTTTACCGGACATGATACAAAAGTGATGCAGAATTCCACTGATCCACCATCCAAGAGAAGCAAAATCGAGAGAAAAATGGATAAGATAATATACATCCTCTTCAGTACCTTGATTTTGATATCCTTTGTTGGTTCTCTCTTTTTCGGTGTTCAGACCAAAAGGGATATTAGTAATGGCAAGTACAGAAGATGGTATCTTCGTCCGGACGATACAACAGTGTTTTATGATCCTAGAGGGGCAACCCTTGCTTCTATTCTTCACTTTTTGACTGCCCTTATGTTGTATGGATATCTAATTCCAATATCACTCTATGTGTCCATAGAAATGGTGAAAGTTCTGCAGAGTATTTTCATCAACCAAGATCAGGAAATGTATTATGAAGAAATAGATAGGCCGGCTCGTGCGCGCACGTCTAATTTGAATGAGGAGCTTGGTCAGGTTGACACGATATTGTCTGACAAAACCGGTACTTTGACATGTAACTCTATGGAGTTTGTCAAATGTTCCATAGGGGGCATTCCATATGGTCGCGGCATGACAGAAGTGGAGAAGGCACTTGCTAGGAGAGGGAAAAATGGGGAATCTGAAGTTGTTGATGGTGTGTCATCTGATTTCTCGGGCCAGAATAGTGATGCCGTCNACTCTCAGAAGCCAATTAAGGGCTTTAACTTTAGAGACGAACGCATAATGAATGGGAGATGGGTTAATGAACCGCGTCCGGACATCATACAGAGATTCTTTCGAGTTTTAGCTATATGCCATACAGCTATTCCAGATGTAGATAAAGAGTCGGGAGAAATTTCCTATGAAGCCGAGTCACCGGATGAAGCAGCATTTGTCATAGCTGCAAGGGAGCTTGGTTTTGAGTTTTTCGCGAGGACACAAACAAGCATATCGTTGCACGAGTTGAATTATGAAAGTGGAAAAAAGGTTGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00811	693	3358	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000811s00031130.1	PF00122.15	E1-E2_ATPase	112	387	7.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.060
SRR1783600	control	1.988
SRR1783602	moderate drought stress	2.355
SRR1811619	moderate drought stress	2.239

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.303
DRR006520	Root Summer glycyrrhizin high producing strain	1.408
DRR006521	Root Winter glycyrrhizin high producing strain	5.009
DRR006522	Root Winter glycyrrhizin high producing strain	4.741
DRR006523	Root Summer glycyrrhizin low producing strain	1.131
DRR006524	Root Summer glycyrrhizin low producing strain	1.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.531
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.583

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.719
SRR2868004	Drought Stress (root)	11.542
SRR2967015	Control (root)	13.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.584
SRR9715740	Leaf	0.986
SRR9715741	Leaf	1.793
SRR9715739	Root	0.386
SRR9715742	Root	4.495
SRR9715743	Root	3.605

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.262
SRR8749028	MeJA induced 9h	0.487
SRR8749029	MeJA induced 9h	0.140
SRR8749030	Uninduced	0.264
SRR8749031	Uninduced	0.327
SRR8749032	Uninduced	0.243

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.526
SRR8400027	Control - Root	9.800