Gene detail

Gene detail information of Glyur000809s00030655

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G29290.1	1.00E-130	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004491962.1	0	PREDICTED: pentatricopeptide repeat-containing protein At3g29290-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q84J46\|PP262_ARATH	7.00E-155	Pentatricopeptide repeat-containing protein At3g29290
trEMBL	tr\|G7KS16\|G7KS16_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES77820.1}

Sequence

Transcript Sequence

>Glyur000809s00030655.1
TGTACGCATACTCTTGACGCTTGNCCCATCTCACCACCGTACACCCCCTAATCCCTCGCCATTCTTCTCACACATGATGACCACTTAGCAGCCCACGAAGTTATCAATGAAGATCACNTTCCCATCTTCACTTTAATCTTCATCTCTATCACAACAACAAATCCATGAGCCACTTCCTCTACACCCGTGAATGAACCGCTCCCTAAACACCACAAATGTGGCCAATGGTGAATATTCAATTATTTAGGGGATGAAAGTTGGATAACTAAGAAACGGCTACAACTGCCAATACCCAGTAAAAATTGATGCTAAACCATTGGTGGAGAAACTTGCAATTTCCCCATGCTAAAATCCACCTTCTTCTTATCTATCACATATTTTTNGTAATTTGCAATCAACTGTTCTGTTAAATCCTCGAAAGGGGTTTTGGGTCCTCAATCCTAACCCTAACCCTCTACCTCCAACGCTCCTTCTTCTATACTTTGCAACTTAGACATAGCTGCTGCTGGTTTCTGCTTCCTACATTCGTCAAGTTTTCGTTTTTAATTTTAAATTTTTGTTACTGTTACATATTGGGTCATGCTCTGTTTGTTTCATAATAATGATAAGCTACTGATAACTTGATATGCCCATTATGTTGAGCTCCCCATTTCAGTTTCAGAATCCTGTTACTTGTCTTCACAAACTTGGTCACTACTCCTTTCTTACTCATACAAATGCTCGTATAATCACACATAATAATTACCTTGACATTGTTTATTTGTCANAACCAAAGCATTCTGTGCCCTCAATTGGGTCAATAGGGTTTCATGAGTCCACAGCACTGTCTAAGGCCATGGTTCCTAGTATTGACTTTTGTCTTTCTGAACAAGAAGAATATGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGTGGTTGAAGGAAGAGAAACAATTGATACATCTTTTGTGTCTCCTTGGGGAGAAGTGGAAGATGATGATGATGATTATGTTGATGATTTTGATGATGATGATGAAGGAAGAGGGGAATTCAATACATCTTTTGTGTCCAAGAAGAAATTGTCTCCATGGGGAGAAGTGGAAGAAGATGATGTTCAAAGAAGAGATGATGTCGATGCATCTTTTGTGGCCGAGNAGGAATTGCCTCCTTGGGGAGAAAAAGAAGATGATGGACACCNGGATTCTAAAGAGGTGGGACTTGTGAATGAGCATGGAGCTCTTTTTTTGGAGGAAATGGATGAAAATGTCCTNTCTAATAGGATATTGGAGCTTAGTAGAATTAACAGGATTAGGAGTGCAATGGAATACTTTAGGTCTATGGAATTGTTAGGTCTTTGTCCAAATATCCATGCCTGTAATTCTCTTTTGTCTAGCCTTCTGAGAAATGGGTGGTTTGATGATTGCTTTAAAGTGTTCAATTTTACAAAAACAAAAAGGATAACTACAGGGCATACTTATAGCTTGATTCTCATGGCATGTGCAAAAGCCCAAGGTTGTGATTCAGCCCTTAAATTCTTCAGAAAACTAGAAAGGGAATGTGATGTGGAGAAGGATTTTGATGCAATTGTGTACAACACCATGATATCTATTTGCAGGGAGGTTGACAATTGGGGTGAAATACAGAGGTTGTGGAGGAGTATGAAGGAAAATGGGTGTGCTGGAACGCTTGCTACATATCGCCTATTAATCAGTAGTTTTGTACATTGTGACCAAAGTGAGCTTGCTCTTTATGCTCACCATGAGATGCTTCAAAATGGATTTCAACCAAACAGCAATATATTGAATGCCATCATTTGTGTTTGTGCTAAGGAGGGAAAATGGGATGCTGCNTTGAGTGTCTTTCAAAGAATGTTGACAAGTGAACTTAAGCCAAACTCAGTTGCATGCAATGCATTAATTAACTCACTTGGAAGAGCAGGGGAACTCAAACTAGCATTTCAGGCCTATAACACCATGAAATCATTGGACCATAAACCAGATGCATACACATTCAATGCTCTACTAAGTTCTCTTAACAAGGCTAATAGGCATCATGAATCTCTTCAGCTTTTTGAGATGATCGAAAGTCAAATGTCTGAATTCAACATACATCTATACAATACTGCTTTAACGTCTTGCTCAAAGCTTGGGTTGTGGGAAAGAGCTCTGGAGATTGTGTGGCAGATGGAAGCTTCTGAACAGTATGATTTGACAGTTTCATATAGCCTTGTGATCAGGGCCTGTGAGCTTGCAAGGAAGCCATCAATTGCATGGCAGGTGTNTGAGCATATGATTCACCAGAAGTGCAGTCCAAACATGTTTACTTNTCTGTCCATAATAAGATGCTGTGTTAGAGGAGATCTCTGGGAAGAATTAGAAGAAANCCTAAATCGGACTATGCCAAACGCCACTCTTTATAATGCTGCCGTTCAAGGGATGTGCTTGCGTGGCAAGGTTAACTTGGCAAAGAAGGTCTACAGAAAAATGCAAGAGTGCGGTCTTGAACCCGATGCCAAAACACGAGTACTAATGCATCCTATGATAAGGAAGTAGCTAGTAGTCTATTAGTTGCTATCACTAACAACATAACNTAGTTTTGAAACAATGACCAAAGGGAGGATAATTTCATAGTCAGCTGAATCAGTGCCGATCAAACAATAAATAACTCTTTTTAGGGTGTTGAGAAAGAGAATAGAAGGCAACCAAAGCGCTGATTACCTTNCAAAGATGGGTGCACAGATAGACACAGCTCTAGTGATTTTGCAGCAGGCACCAGAGGACATTGAATATCTACTTGTTGCAGATAGGCTGGGGACGTCTTTCATGAGGACTTANTTTGTTTTTCTTTTTCTTTTTCCGGATGTTACCAAAGAAAAAGACTAAAATGTTACTGTAATAAAGTAACAACTGTATAGTTACCATCTGNACTCTTTTTTCTCTTTCTATGGTGCTGAGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00809	5057	8838	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000809s00030655.1	PF01535.15	PPR	247	269	0.02
Glyur000809s00030655.1	PF01535.15	PPR	281	308	0.46
Glyur000809s00030655.1	PF01535.15	PPR	319	348	0.00086
Glyur000809s00030655.1	PF13812.1	PPR_3	353	385	0.016
Glyur000809s00030655.1	PF01535.15	PPR	391	416	8.70E-05
Glyur000809s00030655.1	PF13041.1	PPR_2	420	467	2.70E-12
Glyur000809s00030655.1	PF01535.15	PPR	495	520	0.011
Glyur000809s00030655.1	PF13041.1	PPR_2	590	629	5.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.404
SRR1783600	control	1.382
SRR1783602	moderate drought stress	3.528
SRR1811619	moderate drought stress	3.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.486
DRR006520	Root Summer glycyrrhizin high producing strain	3.758
DRR006521	Root Winter glycyrrhizin high producing strain	7.771
DRR006522	Root Winter glycyrrhizin high producing strain	7.512
DRR006523	Root Summer glycyrrhizin low producing strain	3.205
DRR006524	Root Summer glycyrrhizin low producing strain	3.195
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.448
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.601
SRR2868004	Drought Stress (root)	1.696
SRR2967015	Control (root)	1.715

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.803
SRR9715740	Leaf	5.658
SRR9715741	Leaf	4.261
SRR9715739	Root	0.268
SRR9715742	Root	1.498
SRR9715743	Root	1.351

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.619
SRR8749028	MeJA induced 9h	3.017
SRR8749029	MeJA induced 9h	2.393
SRR8749030	Uninduced	1.668
SRR8749031	Uninduced	2.486
SRR8749032	Uninduced	2.338

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.186
SRR8400027	Control - Root	1.865