Gene detail

Gene detail information of Glyur000809s00030654

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G31400.1	genomes uncoupled 1
NR	XP_003621596.1	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|Q9SIC9\|PP178_ARATH	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic (Precursor)
trEMBL	tr\|G7KS10\|G7KS10_MEDTR	PPR containing plant protein {ECO:0000313\|EMBL:AES77814.1}

Sequence

Transcript Sequence

>Glyur000809s00030654.1
ATGGCTTCTGCTCCAACCCCATCACCCAACTGCTCCTCAGTCCCCCCAAGANCCAACAACACTAATAACCAGCAACAGCACCATAACAAGAACCACCACAANAGAAACCTCTCTGAGAATAGCCACTCTAGGACCCAGCAGCACCAACGGCAGAATAAGCGTTGGTCTTCCACCAGAAACTNCTCCAAGCCTGCTTCACCTGAAGCTCAAGCAGAAGCTGCAGGTGCTGGTGCAGGTTCAGGTGTTGGTGCTGGTGCTGCGGGTGCAGGTGCTGGCTCTGGTGCTCCCTTTGCTGGCAGTGGCAGTGGCAATGCCCCTTCTGCAAATTCCTCCTCATTGGGTACCTTGTTGGGTCNCATGGAATCAAGGCTTTCCTCGGAGTTCTCGGGCCGGCGGTCCACCCGTTACACCGCAGCGAAGATGCACTCCGGCCGCCCGAGGATCAGCCCGAACAACCACCGTCACTCTGAGGCTGCTGTGGAGGCCCTGCACTGCCTCATCAATGCTGGTAATAACCCTGCTACTATTGACACTGTGTTGGATACACANGTACCAAAGCTGTGGAAGTGTGATGATTTTGTTTATTTACTTAAGGAGTTTGGGAACACTGGCCACTTCTTGCAGGCCCATATGTGCTATGAGTTTGCTATGTGCAGGGAAAATGGGGACCTTGCTAAGGGGAAGTTGACTAGCGCTATGATTGGTACTCTGGGCAGGCTCGGGAAGGTTGAGAANGCCTGGAACCTCTTCCAGGTAGCCAGGCATGCTGGGTTTGGAAACACTGTGTATTCCTATTCTGCAATGATCAGTGCATTTGGCCGTAATGGGTGCTTCACCCATGCTGTGAATTTGTTCAGGTCCATGCNATCATGGGGACTGGAGCCAAATTTGATTGTTTACAATGCACTGATTGATGCAGGGGCCAAAGGGGAGGTGGACTTTGACATAGTTGTCAAGTACTTTGATGAATTGGTAGCCAAAGGCCTAGTGCCGGATCGGGTTACTTACAATTCACTCCTCTGCACCTGTGTCCCCAAGGGTTTGTGGGAACTGGCTCAAAGCCTGTTGAGGGAGATGGACGAGACGGGGGTTGGCCGGGATTTGTATTCGTACAATACATACCTGGACACGTTGTGTAAGGCCGGACAGATGGATCTGGCCAAGGAGGTTTTGGAGGAGATGCCTCGTAAGAAAGTTTGGCCCAGTGTGGTGACTTATAGCACCATGATGGACGGTTATGCCAAGGCTAACCGCTTAGAAGATGCCCTGAATTTGTACGACGAAATGAATCGTCNGAATGTTGGTTTTGACAGGGTGTCTTACAATACACTGATTGGAATTTATGCTAAGCTTGGCTGGTTTGAGGAAGCTATTTATAAGTGTAAAGAGATGGAGAGACGGGGAATTAGAATGGATGTTGTAACTTACAATGCACTTTTGNGCGGGTATGGGAAGCAAGGCAAGTATGATGAGGTTAGGAGAATGTTTGAAGAGATGAAAGCCAGGAATGTATATCCAAACATGTTGACTTACTCAACAATGATTGATGTGTTCACTAAAAGTGGGAGGTATAGGGAAGCAATGGATGTTTATAGAGAGTTCAAGCAGGAAGGATTGGAGGTTGATGTTGTCTTCTATAGTGCACTAATTGATGCTCTGTGCAAAAATGGTCTGGTGGANTCTTCTATGATGTTGCTTGATGCAATGATAGCAGAAGGCATCAAGCCTAATGTAGTCACTTATAACTCCATAATTGATGCATTTGGGCAGTTGTCAGCTTTGGAATGTGTGGTGGATACTTCATTGCAAGCCACTGAGTATCCAACTGAGCATTCATCTTCTATGGTCACAGACAAGGAGGGTGACCGAATCATGAAGATGTTTGAGCAACTTGTTGCTGCTGAGAAGTCAGGTCATATGAAGAACACTAAGAGGCGCAGCCAAGACCAACTCGGCATATTGTGGATCTTCCGCAAAATGCACGAGATGGATATCAAGCCGAACGTTGTCACATTTTCGGCAATTCTGAATGCTTGCAGCCGTTGCAATTCTTTCGAGGGCGCGTCAAGGCTATTGGATGAGCTCCGTGTCTTTGATAATCAAGCATATGGTGTAGCCCATGGATTGCTCATTGGTTACAGGGACCAGATCTGGTTTCGGGCGCTGTCATTATTCGATGAAGTCAAGCGAATGGACTCATCAACAGCATCCGCCTTCTACAANGCGCTTACAGACATGCTGTGGCACTTTGGTCAGAAACTGGGGGCTCAAATGGTTGTGCTGGAAGGGAGACGGCGGAATGTGTGGAAAGGGGACTGGTCTGATTCATGCCTGGACCTGCACCTGATGTCTTGTGGCGCGGCATGTGCAATGGTGCATGCATGGCTGCTCTATATACGATCTACTGTCTTTGAAGGCTGTGAGCTGCCGAGAATAGTGAACATTCTTACTGGCTGGGGAAAGCACAGTAAGGTTGTTGGGGATGGCACGCTGAAGAGGGCGATTGAGGNGCTGCTAAATGGGATGGGATCACCCTTCCGGATTGCGGAGTCTAATCTAGGAAGATTCACTTCTCCTGGAGATTTGGTGGCTGCATGGTTGAGGCAACCCAGCACNTGGAATGTTCTTGTTCTGCATGATCTCATATGCCATTCTAAACCTCCTGGTCCATCACGGGATTACCCAGCTCTCTGTTTGTAGAGCTTTGTTTGTAAAATGTCCTTTGAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00809	557	3678	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000809s00030654.1	PF13041.1	PPR_2	261	306	4.10E-11
Glyur000809s00030654.1	PF01535.15	PPR	334	363	0.00054
Glyur000809s00030654.1	PF13041.1	PPR_2	367	415	5.60E-14
Glyur000809s00030654.1	PF01535.15	PPR	439	469	2.60E-06
Glyur000809s00030654.1	PF13041.1	PPR_2	472	519	3.00E-16
Glyur000809s00030654.1	PF13041.1	PPR_2	542	588	8.10E-13
Glyur000809s00030654.1	PF13812.1	PPR_3	669	696	0.0051

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.029
SRR1783600	control	11.197
SRR1783602	moderate drought stress	12.740
SRR1811619	moderate drought stress	12.741

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.363
DRR006520	Root Summer glycyrrhizin high producing strain	15.720
DRR006521	Root Winter glycyrrhizin high producing strain	2.904
DRR006522	Root Winter glycyrrhizin high producing strain	2.858
DRR006523	Root Summer glycyrrhizin low producing strain	14.123
DRR006524	Root Summer glycyrrhizin low producing strain	13.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.446
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.491
SRR2868004	Drought Stress (root)	32.796
SRR2967015	Control (root)	35.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.576
SRR9715740	Leaf	13.393
SRR9715741	Leaf	10.152
SRR9715739	Root	28.332
SRR9715742	Root	19.088
SRR9715743	Root	19.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.652
SRR8749028	MeJA induced 9h	11.265
SRR8749029	MeJA induced 9h	4.583
SRR8749030	Uninduced	9.054
SRR8749031	Uninduced	7.390
SRR8749032	Uninduced	5.910

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.731
SRR8400027	Control - Root	30.264