Gene detail information of Glyur000808s00032301 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67900.3 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003613103.1 | 0 | BTB/POZ domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9C9V6|Y1790_ARATH | 0 | BTB/POZ domain-containing protein At1g67900 |
| trEMBL | tr|G7JXS6|G7JXS6_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:AES96061.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00808 | 79148 | 82864 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000808s00032301.1 | PF03000.9 | NPH3 | 208 | 494 | 1.30E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.165 |
| SRR1783600 | control | 18.194 |
| SRR1783602 | moderate drought stress | 53.597 |
| SRR1811619 | moderate drought stress | 53.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.494 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.719 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.653 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.308 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.295 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.619 |
| SRR2868004 | Drought Stress (root) | 26.740 |
| SRR2967015 | Control (root) | 26.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.883 |
| SRR9715740 | Leaf | 21.278 |
| SRR9715741 | Leaf | 11.607 |
| SRR9715739 | Root | 9.190 |
| SRR9715742 | Root | 15.107 |
| SRR9715743 | Root | 16.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.056 |
| SRR8749028 | MeJA induced 9h | 0.053 |
| SRR8749029 | MeJA induced 9h | 0.064 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.060 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.256 |
| SRR8400027 | Control - Root | 24.844 |