Gene detail

Gene detail information of Glyur000808s00032297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65380.1	0	MATE efflux family protein
NR	XP_003613099.1	0	Protein TRANSPARENT TESTA [Medicago truncatula]
COG	YP_003264696.1	7.00E-28	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	4.00E-112	Protein TRANSPARENT TESTA 12
trEMBL	tr\|G7JXS2\|G7JXS2_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000808s00032297.1
ACCGTTTAAAAGCCTCCTATCATTATTGAATCTCCCACTCATTCCTCCTCTTTCTTTTTTTCCCCCCTTCGTTACAGGGTTTCCGAATCCAAAGAAACTCCAGCTAGCTAGCCGTAGTAAGTATAGGCTATGCCGAGCAAAGAGGCTTCACCGTTAGGGGAAGCAAAGGTTCCATTGTTGGAAAATCACCACGCCTTAACCGATGGAGCAGTACAACAAGAAGAGGAACAACAACAACAACAAGATCTCGCACGAAGGGTTTTGGGTTGAATCGAAGAAGCTCTGGCACATAGTAGGTCCTGCAATCTTCAGCCGTATTGCATCCTATTCCATGTTAGTCATCACCCAAGCCTTCGCTGGCCACCTTGGCGACGTCGAACTCGCAGCTATCTCCATCGCCAATAACGTTGTCGTAGGCTTCGACTTTGGCCTCTTGTTGGGGATGGCAAGTGCTTTGGAAACGCTATGTGGGCAAGCATTTGGGGCAAAGAAGTACTACATGTTAGGGGTATACATGCAGCGTTCATGGATTGTTCTCTTCATATGCTGTATCTTCCTTTTGCCTATATACCTATTCGCGACGCCGGTGTTGAAGCTGTTGGGGCAACCGGAGGAGCTGGCGGAGCTGTCGGGGGAAGTGTCGATGTGGTTGATACCTCTTCACTTCGCTTTCGCGTTTCAGTTTCCGCTCAACAGGTTCCTGCAGAGCCAGTTGAAGACTGCGGCTATTGCCTGGGTGTCACTGCTGGCACTTGGCGTGCACGTGTTTGTGAGCTGGTTGTTGGTGTTCAAGCTCCAGTTTGGGGTTATTGGCACTGCTGCAACGTTGAACTTCTCTTGGTGGGCCCTCACTTTGGGCCTTTTTGTTTACACGGTTTGCGGTGGTTGCCCTCTCACTTGGACCGGNTTCTCCATGGAAGCCTTCTCGGGTCTTTGGGAGTTCGTCAAACTCTCCGCTGCNTCTGGAGTCATGCTCTGCTTGGAGAATTGGTATTACAGAATTCTAATATTGATGACCGGAAATCTTGAGAACGCAGAGATTGCTGTGGATGCTTTATCCATATGCATGACGATAAATGGTTTGGAAATGATGATTCCTCTGGCATTCTTTGCTGCAACCGGAGTGCGGGTAGCGAACGAGCTTGGTGCTGGGAACGGGAAAGGGGCCAAGTTTGCTACTGTGGTATCCGTGTTGACATCGTTAATAATAGGACTCTTCTTCTGGACGTTGATTNTGATACTTCACGAGAAAATCGGCTACATATTCTCTACTAGTAAAGCCGTCCTTGATGAAGTAAGCAAGCTTTCTCTTCTCTTAGCCTTCACAATTCTGCTCAACAGTATTCAGCCAGTTCTCTCAGGAGTGGCTGTTGGATCAGGGTGGCAATCATATGTAGCATACATAAATTTGGGTTGCTACTATATTATTGGGGTCCCTCTTGGATTTTTGATGGGCTGGGTTTTCAATCAAGGAGTNATGGGAATCTGGGCTGGGATGATTTTTGGTGGGACAGCTACTCAGACACTAGTATTGATTTTGATTACCGTTCGGTGCGATTGGGACAAAGAGGCTGAGAAAGCAAAATTGCATATAACAAAGTGGGCAGATCCAAAACGAGAACTAAACTAGTGTTTCTTTAAAATTGAAGAGATACACACAAGTGGGGAAGAATGAATTTGCCCATTCGTCACTTCCTGGAAGGGCTACACGGTCTCTTCGTGACCAAAATGCCAAAGGAATTGGCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00808	50544	56286	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000808s00032297.1	PF01554.13	MatE	33	193	2.00E-30
Glyur000808s00032297.1	PF01554.13	MatE	255	416	6.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.022
SRR1783600	control	1.022
SRR1783602	moderate drought stress	1.259
SRR1811619	moderate drought stress	1.334

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.615
DRR006520	Root Summer glycyrrhizin high producing strain	0.669
DRR006521	Root Winter glycyrrhizin high producing strain	15.151
DRR006522	Root Winter glycyrrhizin high producing strain	14.824
DRR006523	Root Summer glycyrrhizin low producing strain	3.512
DRR006524	Root Summer glycyrrhizin low producing strain	3.532
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.121
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.038

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.567
SRR2868004	Drought Stress (root)	59.426
SRR2967015	Control (root)	45.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.444
SRR9715740	Leaf	246.906
SRR9715741	Leaf	164.378
SRR9715739	Root	9.775
SRR9715742	Root	8.235
SRR9715743	Root	9.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.663
SRR8749028	MeJA induced 9h	53.214
SRR8749029	MeJA induced 9h	50.476
SRR8749030	Uninduced	70.661
SRR8749031	Uninduced	107.235
SRR8749032	Uninduced	55.807

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.231
SRR8400027	Control - Root	29.173