Gene detail

Gene detail information of Glyur000808s00032294

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05540.1	2.00E-69	Methionine sulfoxide reductase (MSS4-like) family protein
NR	AEQ20639.1	3.49E-109	translationally controlled tumor protein [Hevea brasiliensis]
Swissprot	tr\|Q5J907\|TCTP_ELAGV	2.00E-109	Translationally-controlled tumor protein homolog
trEMBL	tr\|R4HIT3\|R4HIT3_HEVBR	1.00E-109	Translationally controlled tumor protein {ECO:0000313\|EMBL:AEQ20639.1}

Sequence

Transcript Sequence

>Glyur000808s00032294.1
AATAAAAGGAAACAAACAACAAAAAGTATGAAAAGTAGTATCNGATTAGGACTTATGGAGAAAAAACAGGAACTATTTTTGCAATCTAAATATCAGGAATCCCACCGTACCCTCAACTGTTTTTTATTCTATTCTATTCTATAAAAGCTCACCGCCTCTGTTTTCCCGAAGCTCCCTCACCTTCGCAAACTCTTTGCGCCCTTAGCTCTCTCTTCTTCCTTTAATTTTCCAATTAGATTATCACAACCAAAGAAGAAGCAGGACAACAACAACAATTCTAACCATGCTTGTCTACCAGGATATTCTTACAGGTGATGAACTTCTCTCTGACTCATTCCCGTACAAGGAAATTGAGAATGGAATGCTGTGGGAAGTGGAAGGAAAGTGGGTTGTTCAAGGAGCAGTCAATGTAGATATTGGTGCTAACCCTTCTGCAGAGGGTGGAGATGAGGATGAGGGTGTTGATGAGCAAGCTGTCAAAGTAGTTGATATTGTTGACACTTTCAGGCTTCAGGAGCAACCAGCTTTTGATAAGAAGCAATTTGTTACTTATATGAAGAGATATATTAAGTTGTTGACACCCAAATTAGAGCCAGAGAAACAAGAGTTATTTAAGAAGCACATTGAAGGAGCAACTAAGTACCTCCTATCAAAGCTCAGTGACCTCCAATTGTATGTTTTTGTGGGGGAGAGTATGCACGATGANGGCAGCCTTGTCTTTGCGTACTACAAGGAAGGTGCCACTGATCCAACTTTTATCTACTTTGCATATGGGTTAAAGGAAATCAAGTGTTGAACACGTGGCTTAAAGCTTTGAGATAGCACTCACAGGCCATGTCTGTTCTTAAAGCATATATAGTCGTTAGTCCTTGTGTTTCTGGGTTTTTGTTTTTATACCAATATAGAGTTTTTATAAGTTCAGTATAAGGAGGTTGTTTCAAAAGTTTCATTTTATATGCTTCCTTATATCATTGTGAGAGGAACATGCATGTTGTCAAACAATAATTTAGCCTAGTCGTATGTGTTGTAGTCGTGTATTTATGTCCTTTGCCCTGTAAATTACCTCGTTTGAGCTCTCGGTTTACTAGCTAGGTGATGGAGAGGATAAAACGAAAGTCTGAACAAAAAGGAGGAGGATGTTTTTTTTGGTCAAAAAAAGGAGGAGGATGTTGAAGTTCAACATTAAAACGTTTAGTGAACAAATTAGTCACAATATTTTTGTCACAAAAAAAAAAACCACAACTCAGTTATTTGTCATCAAATGCAAGTTCAGGAGATTGCCCTGGGGAGTGATCAAGGTTTCATGAGGTTTTTGGACCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00808	37222	39654	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000808s00032294.1	PF00838.12	TCTP	1	167	8.00E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.603
SRR1783600	control	7.245
SRR1783602	moderate drought stress	15.542
SRR1811619	moderate drought stress	15.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.861
DRR006520	Root Summer glycyrrhizin high producing strain	31.833
DRR006521	Root Winter glycyrrhizin high producing strain	86.336
DRR006522	Root Winter glycyrrhizin high producing strain	82.867
DRR006523	Root Summer glycyrrhizin low producing strain	35.862
DRR006524	Root Summer glycyrrhizin low producing strain	35.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.299
SRR2868004	Drought Stress (root)	13.991
SRR2967015	Control (root)	18.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.542
SRR9715740	Leaf	17.545
SRR9715741	Leaf	14.228
SRR9715739	Root	7.435
SRR9715742	Root	11.903
SRR9715743	Root	8.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.363
SRR8749028	MeJA induced 9h	7.252
SRR8749029	MeJA induced 9h	9.037
SRR8749030	Uninduced	13.056
SRR8749031	Uninduced	7.109
SRR8749032	Uninduced	7.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.786
SRR8400027	Control - Root	13.799