Gene detail

Gene detail information of Glyur000806s00031686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52820.1	6.00E-77	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003533058.1	0	PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1-like [Glycine max]
COG	YP_008518749.1	2.00E-20	2OG-Fe(II) oxygenase superfamily protein [Variovorax paradoxus B4]
Swissprot	tr\|Q9ZTA3\|AOP1C_ARATH	7.00E-74	Probable 2-oxoglutarate-dependent dioxygenase AOP1
trEMBL	tr\|I1KVA3\|I1KVA3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G22250.1}

Sequence

Transcript Sequence

>Glyur000806s00031686.1
GACAAGACAACCTCGTACTCATATTTAGTTGCTTCACTGAGGAAATTAAGAATAGAAGTATTATTACAAGGATATGTCATGGGTTCTCAATTCCAAACAACAACTTGCCAGGTTCCTGTCGTTGACTTCACTGATGAGAAGTTGAAGCAACCGGGTACAGAGGAGTGGAATTCAGCATGCAAATTGATCCGGGGTGCACTTGAAGATCATGGTTTCTTTTATGCTCTGTGTGATAAAGTTCCAATGGAGCTTCAAAACTCTGTTTTCACTCTAATGGGAGAACTATTTGATCTCCCATTGGAAACAAAAATGCAAAAGAGTAATAGTGATAAGCCTTACCATGGTTATTATGGACAATATGCTCAGATTCCTTTATATGAATCCCTCGGGATCAGTGACCCCTTGACCATTGAAGAAGTTCAAAAGTTCACCAAAATAATGTGGCCTTCAGGATATGATCATTTCTGTGAGACTCTCAATCTCTATGCAAAGCTGCTAGTAGAATTGGACCACATCACAAAGAGAATGGTGTTTGATGCCTATGGTGTGAACCAGAGTCAGTGTGATTCCCTGCTTGAATCAACCGATTACATGCTTCGGAGCTTCAAATATAGGCTGCCGCAGAAGGGTGAAGATGATTTGGGATTGAATGCTCACACAGACACTTCTTTCTTTACCATTTTGCATCAGAATGGTGTGANTGGTTTGCAAGTGAAATTGAAAACTGGAGAGTGGATTGATACCGATCCCTCACCCTTCATGTTTCTGATCCTGGCAGGTGATGCATTTAAGGTTTGGAGTAACGACAGGATACATTGTTGTGAACACCNAGTGATCATAAGCGCAAAGAAGGAAAGATACTCCATGGGACTATTTTCACTTGGTGGAAAGATGGTTCAAACACAAAAAGAGCTAGTTGATGAAGAGCACCCTANACGTTATAAGCCATTTGACCATTATGAGTACCTACGTTTCTTTTTATCAAAAGAGGCTTCAAAATCCAAGTGTCGAATCAAAGCATATTGTGGCATAGACTATGTTGAGGAAAAGTGAAATTTGTGTGGTGAGTGATGTTGAGTCTGGTAGTCTTGAGTCGGTTACTTATCTTATCTTATCCTTAAGTTTGTTTAGGTAGATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00806	90410	93509	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0055114 oxidation-reduction process

molecular_function

GO:0008237 metallopeptidase activity

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000806s00031686.1	PF14226.1	DIOX_N	38	119	4.90E-13
Glyur000806s00031686.1	PF03171.15	2OG-FeII_Oxy	206	292	1.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.257
SRR1783600	control	6.277
SRR1783602	moderate drought stress	0.077
SRR1811619	moderate drought stress	0.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.034
DRR006520	Root Summer glycyrrhizin high producing strain	6.882
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.581
DRR006524	Root Summer glycyrrhizin low producing strain	0.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.912
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.894

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.589
SRR2868004	Drought Stress (root)	22.256
SRR2967015	Control (root)	15.207

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.088
SRR9715740	Leaf	1.260
SRR9715741	Leaf	2.354
SRR9715739	Root	0.174
SRR9715742	Root	0.065
SRR9715743	Root	0.052

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.346
SRR8400027	Control - Root	1.143