Gene detail

Gene detail information of Glyur000806s00031681

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80350.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	AGG55714.1	0	katanin1 [Gossypium arboreum]
COG	YP_004485269.1	2.00E-75	Microtubule-severing ATPase [Methanotorris igneus Kol 5]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	0	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|M4M7Q8\|M4M7Q8_GOSAR	0	Katanin p60 ATPase-containing subunit A1 {ECO:0000256\|HAMAP-Rule:MF_03023}

Sequence

Transcript Sequence

>Glyur000806s00031681.1
ATGGTTGGAAATTCGTTGGGAGGGTTGCAAGAACACCTCAAGTTAGCCAGAGAGCACCTAAGCACTGTTGATGACCCTTTAATTAGAGCGAAATGGATGAATGTTAAGAAAGCCCTTTCTGAGGAAACTGAAGTTGTGAAGCAACTAGATGCAGAGAGAAGGGCTTTTAAAGATAGCCCCATGGGAAGACGCCCTTCCTCNCCTCCGATACCTACTAAATCGTCGTTTGTTTTTCAGCCGTTGGATGAGTACCCTACTTCGTCAAGCGGTCCCATGGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATACTGCAAGTAGAAGACCCTCAAGGGCTGGTCAAATGGGTACTCGGAAATCTCCACAAGATGGGGCGTGGGCTCGGGGTCCTACAAGACCAGGTGCAGCTGGGCGNGGTGCAAAGGCTGGTGGTGCTACAAGCCGGGTTAACTCTGGGGCCCGAGCATCAACTACTGGAAAGAAAGGCGCTGTTTCTGGAAAGTCTACCAAGACAGAGGCAGTTAATGGCGATGCTGAAGATGGTAAGACAAAGAAGGCACAATATGAAGGTCCTGATCCTGAATTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGATGTCGCAGGGCTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCAGTCGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCTTGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAGGCGGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGCGGAGAAAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCTTATGCACCGAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGTGCATCTGGAGAGCATGAATCNTCCAGAAGGGTGAAGTCTGAACTCTTAGTTCAGGTCGATGGTGTAAGCAATAGTGGAACAAATGAAGATGGTAGCCGCAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATACATTCCTCTTCCAAATTTCGAGAGTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTGGCCCCTGATGTCAACATAGATGAAGTAGCTCNCCGAACAGATGGCTATAGTGGAGATGATTTGACGAACGTCTGTCGCGACGCTTCCTTGAATGGTATGAGGCGGAAGATAGCAGGAAAGACTCGCGACGAAATTAAGAACATGTCTAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGGTGAAGGTCCAACGAAGTGTTTCGCAAGCCGACATTGAACGCCATGAGAAGTGGTTCAATGAATTTGGATCAGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00806	51972	56107	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051013 microtubule severing

molecular_function

GO:0005524 ATP binding

GO:0008017 microtubule binding

GO:0008568 microtubule-severing ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000806s00031681.1	PF00004.24	AAA	250	387	4.00E-38
Glyur000806s00031681.1	PF09336.5	Vps4_C	449	494	8.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.945
SRR1783600	control	12.076
SRR1783602	moderate drought stress	10.947
SRR1811619	moderate drought stress	11.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.260
DRR006520	Root Summer glycyrrhizin high producing strain	27.174
DRR006521	Root Winter glycyrrhizin high producing strain	6.379
DRR006522	Root Winter glycyrrhizin high producing strain	6.275
DRR006523	Root Summer glycyrrhizin low producing strain	18.489
DRR006524	Root Summer glycyrrhizin low producing strain	19.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.093

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.477
SRR2868004	Drought Stress (root)	27.054
SRR2967015	Control (root)	31.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.343
SRR9715740	Leaf	13.695
SRR9715741	Leaf	13.662
SRR9715739	Root	21.391
SRR9715742	Root	23.148
SRR9715743	Root	24.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.029
SRR8749028	MeJA induced 9h	28.171
SRR8749029	MeJA induced 9h	18.579
SRR8749030	Uninduced	10.251
SRR8749031	Uninduced	6.963
SRR8749032	Uninduced	4.279

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.526
SRR8400027	Control - Root	38.319