Gene detail

Gene detail information of Glyur000805s00021382.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04920.1	0	sucrose phosphate synthase 3F
NR	XP_007146334.1	0	hypothetical protein PHAVU_006G031700g [Phaseolus vulgaris]
COG	YP_007146799.1	6.00E-135	HAD-superfamily hydrolase, subfamily IIB [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q8RY24\|SPSA3_ARATH	0	Probable sucrose-phosphate synthase 3
trEMBL	tr\|V7BMR5\|V7BMR5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW18328.1}

Sequence

Transcript Sequence

>Glyur000805s00021382.1
ATGGCTGGGAATGAATGGATTAATGGGTACCTTGAGGCCATACTCTCAACTGGGGCATCCACGATTGAGGAGCAAAAGCCAGCAGCAGTGACACTTGGGGATGGAGGGCATTACAACCCCACCAAGTACTTTGTGGAAGAGGTGGTGACAAGTGTTGATGAGTCTGATTTGTATAGAACTTGGATCAAGGTTGTTGCCACACGCAACACCAGGGAGAGGAGCTCAAGGTTGGAGAACATGTGCTGGCGCATTTGGCATCTTGCACGCAAGAAGAAGCAGTTGGAATGGGAGGAAGGCCAGAGATTGGCGAACCGAAGATGGGAGAGAGAACAAGGACGCAGGGATGCTACAGAGGACATGTCTGAAGACCTGTCAGAAGGAGAAAAAGGTGATAGTATNGGGGAGATGGTGCAATGTGATACCCCAAGGAAAAGATTCCAGCGTCAGGTTTCTAACTTGGAAGTATGGTCTGATGACAAAAAGGAAAATAAGCTCTATATTGTCCTCATAAGTATGCATGGATTGGTTCGAGCAGAAAATATGGAGCTTGGTCGAGATTCAGATACTGGTGGACAGATCAAATACGTGGTAGAACTTGCTCGTGCACTTGCAAAAATGCCTGGAGTATATAGAGTTGATCTGTTTACACGCCAAATCTCATCACCTGAAGTTGATTGGAGCTATGGTGAACCTACTGAAATGCTAACAGCAGGTGCAGATGATGATGATAGCATTGGGGAGAGCAGTGGTGCATATATCATAAGAATACCCTTTGGTCCACGTNATAAATACCTCCAGAAAGAACTTCTTTGGCCCTATATTCAAGAATTTGTTGATGGAGCATTAACACACATTCTCAACATGTCAAAAGTATTGGGTGAACAAGTTGGTGGGGGGCAACCTGTCTGGCCATATGTAATTCATGGACATTATGCTGATGCTGGAGATAGTGCTGCTATTCTTTCTGGTGCTTTAAATGTACCAATGGTGCTGACTGGTCATTCACTTGGAAGAAACAAGCTTGAACAACTTCTTAAGCAAGGACGCCAATCAAAGGAGGATATCAATTCAACATACAAGATGATGAGGAGGATAGAAGCAGAAGAACTTTCCCTCGATGCTGCTGAACTTGTTATCACTAGTACAAAACAAGAAATTGAGGAACAGTGGGGACTTTATGATGGATTTGATGTCAAGGTTGAGAAAGTATTGCGTGCTCGTGCTAGACGTGGTGTCAACTGTCATGGTCGATACATGCCAAGGATGGCGGTTATCCCCCCTGGTATGGACTTTAGCAATGTTGTGAACCAAGAAGAGTTACCTGAAGCTGATGGAGAGCTTGGTCAGCTTACTGGTGGCGTTGAAGGGTCTTCACCAAAATCAATGCCTGCAATTTGGTCAGAAGTGATGCGTTTCTTTACAAATCCTCACAANCCTGTGATCTTGGCCTTATCAAGACCAGATCCAAAGAAGAACTTAACCACTCTTTTAAAAGCATTTGGAGAAAGCCGTCCCTTACGAGAACTTGCTAATCTTATGCTCATAATGGGAAACCGGGATGACATAGATGAGATGTCTTCTGGGAATGCCAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTTTATGGGCAAGTGGCATACCCTAAACATCACAAGCAGTCTGATGTTCCAGAGATATACCGGTTTGCGGGAAAAACAAAGGGTGTTTTCATAAATCCAGCTTTAGTAGAGCCTTTTGGTCTTACTTTAATTGAGGCAGCAGCACATGGGCTTCCAATGGTGGCCACTAAAAATGGGGGACCAGTGGACATTCATCGGGCCCTCAATAATGGTTTGCTTGTGGACCCTCATGATCAGCAAGCAATTACTAATGCATTGATCAAGTTGTTGTCAGAGAAAAACCTGTGGCATGAGTGCAGGAAAAATGGTTGGAAGAACATACACCTTTTCTCATGGCCTGAACACTGTCGTACTTATTTGACCAGGGTGGCAGCTTGCCGGATGAGGCATCCACAATGGCAAACTAATACTCCGGGGGATGATATAACTGTTGAAGAGTCTTTCAATGATTCACTCAAGGATGTGGCGGACATGTCCCTTAGGCTCTCTATTGATGCTGACTTGGCTGCAGCAAGTGCTGGACCTGAGATGCAAGACCAGGTGAAGCGGGTCCTAAGCAAGATGAAGAAGTCAGATTCTGTTGGTTTGAGTGACACTGATGGTGGGAATAAGCTGCCTGACAATGTAACTGGAAAATACCCTCTATTGAGGAGAAGACGTAGGTTGATTGTTATAGCAGTTGATTTCTATGACAAAAATGGAGCTCCTGATAAGAAGATGATCCAGATAGTGCAAAGGATCATTAAAGCTGTTCANCTAGACCCTCAAACTGCAAGAGTTTCAGGATTTGCTTTATCAACAGCTATGCCAATGCTAGAAACAATAGAGTTCCTTAAATCTTGCAACATTCAAGTAAATGATTTTGANGCTTTAATTTGCAGTAGTGGGAGTCAGCTTTACTATCCCGGTGCTTACACGGAGGATGGAAAGCTTCTTCCTGATCCGGATTATGCAGCACATATTGACTATCGATGGGGTTGCGAGGGTCTAAAGAAAACCATTTGGAATCTTATGAATATTGCTGAAGGTGGAGAAAAGTATTCCAGCCCCATTGAAGAAGATTTGAAATCAAGTAATGCACATTGCATCTCATACAAAATAAAGGATCTTAGTAAGGCAAAGAGAGTTGATGACTTGAGACAGAAGCTTAGGATGCGAGGCCTACGTTGTCATCCTATGTATTGCAGGGGGTTATCTTATATGCAGGTCATTCCACTCCTNGCATCTAGAGCACAGGCACTCAGGTATCTCTTTGTCCGTTGGAGACTGAATGTTGCAAACATGTATGTCATTCTTGGAGAAACTGGGGACACTGATTATGAGGAATTGATTTCTGGAACTCACAAGACCATAATCATGAAGGGGGTAGTGTCTAAGGGTTCAGAAGAAAANCTTAGAGGTCCAGGAAGCTACCAAAGAGCTGATGTTGTACCAGATAAGAGTCCTCTTGTTGCATACATTAGTGAAACAACTGAGGNCAAAATTGCTAATGCTTTGAAGGAACTATCTCGATCTGGGCTAATGTGAATTGCTAAAGTAGGCTGCTAGGTGCAATTTTTTTTTTATATTTTATAAATGCAGGTAATACNATGCCATTTACCTTTACAGACCACAGACTGAAAATTGGATGTAATTCCTCTGCTATTATGAAGCATAGAATCTGGCAAAACTTATATATGGCTTACTGTGTTATAAAATGCATTTTGTTAATACTTGTTAGAACTTATATAGAACAACATCAGCATCAATAACCGAGTCTTATCCCACTAGATGAACTTGTATAGCAAACCCGGTCTCTTTTAACAACTAAACAATTTACCCTATTGAACTTGTGACTGACTGAGCAAATTCNACTATTAATATAACACCTAATAATTCTCAGTGTGATCCAGCTCTAGTGAGTGAATTTGTTCATTCTACTACTCTTTNGAGGACAATTTGTAAGACTCTTCTGCACGGGCTTCTTCCAACATCATCGAGAGTTCCTTCACGAAAGGTGTATTTGAACCATGAGTAATCCTTAGTATATCCACAGCCTTGGTCAGTGATTTAA

Protein Sequence

>Glyur000805s00021382.1
MAGNEWINGYLEAILSTGASTIEEQKPAAVTLGDGGHYNPTKYFVEEVVTSVDESDLYRTWIKVVATRNTRERSSRLENMCWRIWHLARKKKQLEWEEGQRLANRRWEREQGRRDATEDMSEDLSEGEKGDSXGEMVQCDTPRKRFQRQVSNLEVWSDDKKENKLYIVLISMHGLVRAENMELGRDSDTGGQIKYVVELARALAKMPGVYRVDLFTRQISSPEVDWSYGEPTEMLTAGADDDDSIGESSGAYIIRIPFGPRXKYLQKELLWPYIQEFVDGALTHILNMSKVLGEQVGGGQPVWPYVIHGHYADAGDSAAILSGALNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKMMRRIEAEELSLDAAELVITSTKQEIEEQWGLYDGFDVKVEKVLRARARRGVNCHGRYMPRMAVIPPGMDFSNVVNQEELPEADGELGQLTGGVEGSSPKSMPAIWSEVMRFFTNPHXPVILALSRPDPKKNLTTLLKAFGESRPLRELANLMLIMGNRDDIDEMSSGNASVLTTVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRFAGKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDQQAITNALIKLLSEKNLWHECRKNGWKNIHLFSWPEHCRTYLTRVAACRMRHPQWQTNTPGDDITVEESFNDSLKDVADMSLRLSIDADLAAASAGPEMQDQVKRVLSKMKKSDSVGLSDTDGGNKLPDNVTGKYPLLRRRRRLIVIAVDFYDKNGAPDKKMIQIVQRIIKAVXLDPQTARVSGFALSTAMPMLETIEFLKSCNIQVNDFXALICSSGSQLYYPGAYTEDGKLLPDPDYAAHIDYRWGCEGLKKTIWNLMNIAEGGEKYSSPIEEDLKSSNAHCISYKIKDLSKAKRVDDLRQKLRMRGLRCHPMYCRGLSYMQVIPLLASRAQALRYLFVRWRLNVANMYVILGETGDTDYEELISGTHKTIIMKGVVSKGSEEXLRGPGSYQRADVVPDKSPLVAYISETTEXKIANALKELSRSGLM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00805	104726	110849	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00696	E2.4.1.14	EC:2.4.1.14	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005985 sucrose metabolic process

GO:0009058 biosynthetic process

molecular_function
GO:0046524 sucrose-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000805s00021382.1	PF13579.1	Glyco_trans_4_4	190	387	5.60E-09
Glyur000805s00021382.1	PF00534.15	Glycos_transf_1	475	649	4.20E-27
Glyur000805s00021382.1	PF05116.8	S6PP	806	996	6.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.826
SRR1783600	control	0.709
SRR1783602	moderate drought stress	1.093
SRR1811619	moderate drought stress	1.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.201
DRR006520	Root Summer glycyrrhizin high producing strain	2.018
DRR006521	Root Winter glycyrrhizin high producing strain	1.177
DRR006522	Root Winter glycyrrhizin high producing strain	1.037
DRR006523	Root Summer glycyrrhizin low producing strain	2.381
DRR006524	Root Summer glycyrrhizin low producing strain	2.396
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.666

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.497
SRR2868004	Drought Stress (root)	1.006
SRR2967015	Control (root)	0.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.503
SRR9715740	Leaf	0.141
SRR9715741	Leaf	0.411
SRR9715739	Root	0.141
SRR9715742	Root	0.434
SRR9715743	Root	0.390

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.227
SRR8749028	MeJA induced 9h	0.793
SRR8749029	MeJA induced 9h	0.623
SRR8749030	Uninduced	0.358
SRR8749031	Uninduced	0.193
SRR8749032	Uninduced	0.346

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.649
SRR8400027	Control - Root	0.712