Gene detail

Gene detail information of Glyur000805s00021377

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18260.1	3.00E-53	Cytochrome b561/ferric reductase transmembrane protein family
NR	XP_007146218.1	3.80E-134	hypothetical protein PHAVU_006G022300g [Phaseolus vulgaris]
Swissprot	tr\|Q0WPS2\|B561M_ARATH	7.00E-63	Cytochrome b561 domain-containing protein At4g18260 (Precursor)
trEMBL	tr\|V7BJS7\|V7BJS7_PHAVU	1.00E-134	Uncharacterized protein {ECO:0000313\|EMBL:ESW18212.1}

Sequence

Transcript Sequence

>Glyur000805s00021377.1
ATACACTTAAGAATAACCTGGGCTTACTCATGAGTTTTCTCTGACCTCATATTGATCTCATTCTTTCTTGAATTGGTGACAACTGTTTAGTTGTGCCATCTGACAGGTGAGGTAAGATAAGAGTGCTCACTCCTAAGAATCCTTTCACAGACACACAGCAAAAGATAGGTAGAGAGAGAGAATGATAAGCACCACTAGTCCACGGGGAAGCACATTCAGTATTTGAAATGCTCTAGTTCTGCTTCCTTAAATCTTCACTAGCATTGGAGATTGAGTTGACCATTGATCACACATTTTCAACAAAAGAAGGAAGAATGAGAGGAATCCAAGTCCAGCAAAAGCTCGTTGCTTTCCTCTTTCGAGCAACTAGTCTTGTTTTCTTCTTAATCCCCCTTGTTAGCTCATCCTCCCAAGAACATCACCAGGAAATTATAGGCACTCATTCAAGAAACAAAGACAGCCACATTATTAAGATGAGTCCTAGACTTCAGTTTGAAATTACATTACATGGCTTTCTCCTGTGGGCTTCAATGGGGTTCTTGATGCCTGTTGGTATACTTGTAATTAGACTATCAAACAGAGAGGAAAATCCAAGGAGGCTCAGAATTGTATTTTATGTTCATGCAATTTTGCAGGCAAGTATGGTGGCTGTACTTCTTGCCACAGCAGGAGCAATCATGTCCATAAAAAATTTCAACAACCTTTTCAACAATAGTCATCAAAGATTAGGAGTGGCACTATACGGTGTTATTTGGCTGCAAGTCCTAGTTGGTATTTTTCGACCACAAAGGGGATCCAAAAGAAGAAGTGTGTGGTTCTTTTCGCACTGGTTACTTGGAATTGCGATCTCATTCCTGGGTGTCCTGAATGTATATATTGGTTTAGGAGCTTACCATGAGAAAACATCAAAAGGCATAAGAAATTGGAATATACTTTTCACCATTCAGATATCTTTGGTTGTATTTTTCTACCTTTTACAAGAAAAATGGGTCTACATAAAAAACCAAGGAGTGATTTTGGGCAATGAAATGATGACCCCCACAAGTTGTCAAGAAAGTCATCCAGATGAAAAGGAGATGTGGATCTCTAAAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00805	82578	86393	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000805s00021377.1	PF03188.11	Cytochrom_B561	64	190	6.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	131.940
SRR1783600	control	132.620
SRR1783602	moderate drought stress	43.822
SRR1811619	moderate drought stress	43.241

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	88.871
DRR006520	Root Summer glycyrrhizin high producing strain	87.320
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	17.840
DRR006524	Root Summer glycyrrhizin low producing strain	17.480
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.906
SRR2868004	Drought Stress (root)	6.372
SRR2967015	Control (root)	6.863

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.196
SRR9715740	Leaf	0.895
SRR9715741	Leaf	2.684
SRR9715739	Root	2.733
SRR9715742	Root	17.169
SRR9715743	Root	16.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.707
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.168
SRR8749030	Uninduced	0.114
SRR8749031	Uninduced	0.210
SRR8749032	Uninduced	1.244

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.064
SRR8400027	Control - Root	103.191