Gene detail information of Glyur000805s00021368 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34480.1 | 9.00E-93 | Ribosomal protein L18ae/LX family protein |
| NR | KDO51884.1 | 2.75E-124 | hypothetical protein CISIN_1g030276mg [Citrus sinensis] |
| Swissprot | tr|Q9ATF5|RL18A_CASSA | 7.00E-122 | 60S ribosomal protein L18a |
| trEMBL | tr|A0A067E9K7|A0A067E9K7_CITSI | 1.00E-124 | 60S ribosomal protein L18a {ECO:0000256|PIRNR:PIRNR002190} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00805 | 53141 | 55479 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000805s00021368.1 | PF01775.12 | Ribosomal_L18ae | 39 | 160 | 1.50E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.257 |
| SRR1783600 | control | 9.320 |
| SRR1783602 | moderate drought stress | 7.916 |
| SRR1811619 | moderate drought stress | 7.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.610 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.125 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.802 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.292 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.884 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.860 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 63.620 |
| SRR2868004 | Drought Stress (root) | 36.140 |
| SRR2967015 | Control (root) | 30.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.029 |
| SRR9715740 | Leaf | 12.654 |
| SRR9715741 | Leaf | 8.279 |
| SRR9715739 | Root | 1.564 |
| SRR9715742 | Root | 4.284 |
| SRR9715743 | Root | 4.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 126.110 |
| SRR8749028 | MeJA induced 9h | 48.924 |
| SRR8749029 | MeJA induced 9h | 52.686 |
| SRR8749030 | Uninduced | 6.856 |
| SRR8749031 | Uninduced | 1.518 |
| SRR8749032 | Uninduced | 2.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.869 |
| SRR8400027 | Control - Root | 28.355 |