Gene detail information of Glyur000805s00021362.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43000.1 | 6.00E-49 | NAC domain containing protein 42 |
| NR | KHM99647.1 | 6.07E-116 | NAC domain-containing protein 42 [Glycine soja] |
| Swissprot | tr|Q9SK55|NAC42_ARATH | 4.00E-63 | Transcription factor JUNGBRUNNEN 1 |
| trEMBL | tr|K7L9Y7|K7L9Y7_SOYBN | 5.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G41995.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00805 | 14464 | 21691 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000805s00021362.1 | PF02365.10 | NAM | 28 | 142 | 3.90E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.923 |
| SRR1783600 | control | 1.905 |
| SRR1783602 | moderate drought stress | 3.816 |
| SRR1811619 | moderate drought stress | 3.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.209 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.879 |
| SRR2868004 | Drought Stress (root) | 41.979 |
| SRR2967015 | Control (root) | 31.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.663 |
| SRR9715740 | Leaf | 17.273 |
| SRR9715741 | Leaf | 21.394 |
| SRR9715739 | Root | 0.604 |
| SRR9715742 | Root | 1.486 |
| SRR9715743 | Root | 1.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.020 |
| SRR8749028 | MeJA induced 9h | 20.626 |
| SRR8749029 | MeJA induced 9h | 7.286 |
| SRR8749030 | Uninduced | 160.908 |
| SRR8749031 | Uninduced | 139.801 |
| SRR8749032 | Uninduced | 39.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.693 |
| SRR8400027 | Control - Root | 7.329 |