Gene detail

Gene detail information of Glyur000804s00033425

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80770.1	1.00E-153	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003532225.1	0	PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max]
COG	YP_003482467.1	3.00E-38	small GTP-binding protein [Aciduliprofundum boonei T469]
Swissprot	tr\|Q9C6I8\|NOG1_ARATH	5.00E-31	Nucleolar GTP-binding protein 1
trEMBL	tr\|K7LAJ8\|K7LAJ8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G45370.2}

Sequence

Transcript Sequence

>Glyur000804s00033425.1
ATCANGTTTGTGTAATTTTGGTCCCCACAACTACAATTGCGTGATTTTAGTTTTTAGATATTACGATTGTGTGATTTCATTCACCTAGGTTCTAATTATGCNATTTTGATCCCCTCAAATATCTCAATCGTTACAATCAGATCCCTTTGGTCACTGTGCCGTCCAATTTTTAATCAAAAGAACCTATANGACACACATGAGACTGATTTGACATTAAGTTGGGCCGCCTTGACACGGTGTGTATTGCTAGAAAATTTCTCAAAGCAAACCAAGTAGCAAGTTTAAAATGTTTGACATATGAGATTCTTTGCATCGTCATAGTGTTAAGTCGTTAANTCGACTCGACTCATTGTCAAATCAGTCTCACTTGTGCTTTGTAGATTTTTAATGTTAAAAANTGGATAACAGAATAGAGGGACTATACGTAACAATTTNAATATTTAGAGGACCAAAATCGCACANTTAGAACCTGAGNATCAAAATCTCATAACCAAAATCATGCAATTAGAACACGAGGATCAAAATGGCACAATTGCGATATTTAAGAGACCAAAATTGCAATTAAGAAGAAAATAAACAGGATAGGGTAAATGTAAAATTTAACCAAAATCAAAACCGCAGCTGCTGCCCGCTGGACAACCACTGGAAAGTGGAAACTGAACTGAAATAAGGGAAGGGAGGTTTGTTTCGGAACACACTCGTTAACTTGTCCGTCCTCTAAGTTAACGGTAGCCGAATACGAAGCCAAACGCTTTATCGAGCAGAGCAGAGCACACGCAAAGACATGAAAGGCTCTTCCACTCTTTTCCTCAAAGGCCATTTTCCTTCTTCCATTTTACTCCTCAAAGGAACACCCAATGCTGCAAAACTGCGTCGTCCCAACTCGTGCCTCTGCTGTAAGAGCATCCAAACTAATTCATATGAAGTTGTTACTAATGGAAGTTATGTCCCCACTCTGCACCACACCAAAGAAAATAATATCACGGAAAAGCCATCTAGAAAAACTGAATCTATTGGAGCATTTCAAAAGTTGCCTATAGTGATGCCATCCATCGACATTCTNGGGTCAGCACTGAGAAAGGCCAAGAGGATTTCTCCGACAAAAGGAATTGCCAATATTGCAAAAAGAGAGAAAAACAAGGGTGCAAAACAACTTGATGCGTTGATGAAGGAACTTGCTGTTCCCTTGAGGACATATGTGGAGAATTTTCCTAATAAAACACACCTTCATCCATATGAAAGGTCTCTTATTGAGCTGACGCTTGGAGACGGTTACTATGAAAAGGTGCTAGGAAAGGTAGATGGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGTGCTAAGTCTACGTCAAAGCGAGAAGCAGAGGAAAGACTGAATGAGGGTCTTAAGAAAATTGAGGAGATTTTTGCTCAAGAACGGAAAGTTGTTGACGATTTGTTAGACATAGCCAAGACTCTGAGGGCAATGCCTGTAATTAATTTGGAAACACCAACACTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGAAAGCCTGAGGTTTGCAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTGTTTTTAACTATCNAAAGTTTCAGGTAACGGATACTCCAGGCCTCCTTAAGAGAGATGATGAGGAAAGAAATAATTTGGAAAAGTTGACCCTTGCTGTCCTTTCACATCTACCAACAGCAGTTTTGTATGTTCATGACCTTTCTGGGGAGTGTGGAACCTCACCTTCTGATCAGTTTTTAATATACAAAGAAATCAGAGAAAGGTTTAGTGGACATTTATGGATTGATGTTGTGTCCAAATCTGATCTGTTGAAGACGTCTCCTGTGGTATATGCAACAGAAGAGCCNGATCCCACACAACACGAGCTGGAGAAGTACAGGAAATCAGGTCCTGATGGAGCTATTAATGTATCTGTGAAAACACAAGGAGGAGTACAGGAGGTGAGGAAAATCTATTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00804	92075	99395	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015684 ferrous iron transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005525 GTP binding

GO:0015093 ferrous iron transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000804s00033425.1	PF02421.13	FeoB_N	243	301	1.80E-08
Glyur000804s00033425.1	PF06858.9	NOG1	308	365	1.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.383
SRR1783600	control	5.778
SRR1783602	moderate drought stress	6.001
SRR1811619	moderate drought stress	5.891

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.443
DRR006520	Root Summer glycyrrhizin high producing strain	4.246
DRR006521	Root Winter glycyrrhizin high producing strain	3.595
DRR006522	Root Winter glycyrrhizin high producing strain	3.497
DRR006523	Root Summer glycyrrhizin low producing strain	4.516
DRR006524	Root Summer glycyrrhizin low producing strain	4.412
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.942
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.488

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.309
SRR2868004	Drought Stress (root)	3.509
SRR2967015	Control (root)	3.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.233
SRR9715740	Leaf	3.741
SRR9715741	Leaf	2.996
SRR9715739	Root	0.175
SRR9715742	Root	2.342
SRR9715743	Root	1.800

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.804
SRR8749028	MeJA induced 9h	5.349
SRR8749029	MeJA induced 9h	5.818
SRR8749030	Uninduced	1.171
SRR8749031	Uninduced	0.539
SRR8749032	Uninduced	0.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.176
SRR8400027	Control - Root	8.255