Gene detail

Gene detail information of Glyur000804s00033423.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05490.1	0	chromatin remodeling 31
NR	XP_007140762.1	0	hypothetical protein PHAVU_008G139700g [Phaseolus vulgaris]
COG	YP_004643845.1	1.00E-25	hypothetical protein KNP414_05451 [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|F4I8S3\|CLSY3_ARATH	0	SNF2 domain-containing protein CLASSY 3
trEMBL	tr\|V7B8F7\|V7B8F7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12756.1}

Sequence

Transcript Sequence

>Glyur000804s00033423.1
ATGAGTGAGGAAGGTGATAAAGGTGCAAACTTTGGCGATGATAACAACCTTGGTTTGAAACCTGAAAACCCAATCACAATAGACTTCGATGATAGTGATGAAGAAGAGCATGGTGTGGAGGAAAGTAGTGGTGATGATGATGAGGATGATGATGATGATGATGAGGATGAGAGTGAGGACAATGAGACCAGCGATGAAGATTTTATAGGTGATGATGAGGGGAGTGAAAGTTGTAGCAGTGAAGACAGCTCTACCTCTTATGAAGACGAGGACGACGAGGAGGATTGGAGGAGATATAGCAAGGAGAGAAGAAGAAAAAGCAGTGGAATCTGCACTGAAAATGGTGAGAATGAGAGGAGGAGATACAAGCGGGTAGTAGAGGAGGGAGGGTTTGAGAACACTCCATCATCTGTTAACAATGATGAATGGAAGCATGGAGATTGCTCTAGTGTAACTTCTAGAGCACGTGAGATGAAGGGTTCTTCTTCTAATTCCAAGCCACATGAGGAAGTGGAGAAGAAACAGGAGGAGAAGGGAAAGAGAATGGTTGTGGAAAATGTCAGTGATGATGATGATGATGATGATGATGATGTTGGAGCTGTTGGTGGTGGTGGTTACCACAAGAGTTCTTCTGAAGATGGAGCACAAAAGGGTAAGAAGAAAAAAGACAGCTTTATTAGAGGTAATAATACTCAGAGTGTACCTGTGATGGAAGAGACAGGAGATTCAACTATGGTCAACGAGAGTGAGAGAAATAATGCCAATGCCAATGGTAATGGCCGTGTGAATGTTGATTCCCATGAAGGAAAAGAGCATAGTGGCAGAGGTTTAGGTGTGAGAAGAAGAAGTGATTCTTCATTGCCAGAAAAACNAGAGAAGATGGGGGATTCAGCTGAACATGAAATCATGGAGAACAAAAGAAGGTGGCATAAGGATGGAATCAAAACCAACAATCGTGAGAAGGCAAGGGTGGATGACAAAACTGGTGACAAAGAAGTGCTGCTGCATCATAAGGTCCGAAGGATGCCTTTTAGGCAAAAGCAGCTACGTTTACTTGAACTCCTTGCTGAATGCTATATTGGGAAGAAAAATTCCATGAAAGGTGATACAAATGGTTTAGAAGAAAAGGATGGTGGTGATGTTCATAAGCTAGAGACTCCGTCACGTGGGGAGACACTGCTATCGATATGGAGCCTCAAGAAGGATGAACTGCCAGTGCAAAAATCCAAGNAAGAGGAGGAGTTGGAGACGTTGTGGAGTGAAATGGATAAGTTGATTGCAGAAGAACAGATGGATTCCCTGGTTGGCAAANTAATTACAAATGAAGATATGCAAAACTTGGGATGTCCAAACCCTCATTGTAAACACGACATTTATCTCGACTTGGAGATTGGTTATTATTGCAGATATTGTGGTTGGGTTTCCGTTGAGATAAGAGATATCTCGCCACCAGTGTTGGATAGATCTCCTTATGAAGGGTCAGGAAGAAGGCTGTCAGCTGGAGGTGGAGCAGATGCCTCACTCTTTGATGAGGATCATTTCAATGTTTGTGGTGGTGACTCAGACTCAGACCCTGTCTTCTCTCACAAGGAAGGCACAGTTTGGGACCTGATTCCTGACATCAAACAAAGCCTATATCCTCATCAACAACAAGGTATCGAGTTCATTTGGAAGAATCTGGCAGGAAGCATTGACCTCCACAAGTTGAAGAGAGCTGACCCTTGTAGAGAAGGTGGCTGCATCATCTCCCATGCTCCCGGGACAGGGAAGACGCGGTTGACCATGGTGTTCCTTCAGACATATTTGCGGGTGTTCCCNAAGTGCTTACCGGTCATTGTTGCTCCTGCTAGCTTGCTGCTTACCTGGGAGGATGAGTTCATGAAATGGGACATTGGAGTTCCATTCCACAACCTGAACAATCCTGAGTTGTCAGGCAAAGAGCATGTTGATGCCACCGATGTTGTTGATTGGTGCAAAAGTCAGAAGCAGAACAAGGATGCCATACGGATGGTGAAGCTATGTTCGTGGTTCAAAGAGAAGAGCATTCTAGGAATTAGCTACAGTCTGTATGAGATACTGGCAGGGGAAAAATCCCAAGATGAAAAGAAAACCAGGAAGAAAAATGGGAGCTTGAGAAAACAGAATGGGAGGGACAACAATGAGAATGGTGTGATGGGAAAGGTTCTGCGTGAAGTTCCTGGCTTGCTAGTCCTAGATGAAGGGCACACGCCTAGAAACCAGCATAGTCGTATTTGGAAGGTTCTCTCAAAAATCCAGACCCAGAAGCGAATCATTCTATCGGGGACTCCTTTCCAGAACAATTTTCGGGAACTGTATAACACCCTCAGCTTGGTAAAACCTTCCTTTCCGGACATGATGCCACCGGAACTGAAGAAGTTTTGCCAGAACAGACTAATGCAGGAAAGAAAAGCATCCAAGGAAATGTCTTGGGAGCCTGTTTCTTGTGGAAATCCTGCTGATGACAAGATAAACCAATTGAAATCACTGATGGATTCGTTTGTTCATATTCACAAGGGTAACATTCTCCAGAAAAACCTTCCTGGGTTGAGGNATTGTGTGCTGGTTTTGAAGCCAGAGAGTTTGCAGAAAGAGATCCTAGAGAGCATTGAGTGTTCTCAGAACACACTGGACTTTGATTACAAGCTGGCTGTGGTGTCTGTCCATCCATCCCTTTTCCTCCCATGCTCTCTCACAGAAAGGGAAGAATCTGTGGTTGATAAGGAACAGCTGGAAAATCTTAGATTGGACCCCTATGGGGGTGTCAAAACCAGATTTCTGGTTGAGTTTGTTAGGCTGTGTGATACATTAAATGAGAGAGTTCTTGTTTTTAGCCAATTCATCGATCCTTTGGATTTGATCATAGCCCAACTCAAGTCATATTTGAATTGGTCTGACGGGAAGGAAGTGCTGTCAATGCGTGGCAAGCTTGGCCAACAGAAGAAGCAGTCCCTGATTCATCGCTTCAACGATGCAAATAGCCAAGCAAAGATAATGCTTGCATCCACAAAGGCATGCTCTGAGGGGATTAACTTGGTTGGAGCTTCAAGGGTTGTGCTGCTGGATGTTGTTTGGAACCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCCTATAGGCTTGGCCAAAAGAAAGTTGTTTACACATATCATCTCCTCACTCAAGGGACCGCTGAATGCACCAAGTATTATAAACAGGCCAAAAAGGACAAGTTATCGGAACTGGTTTTCTCAGCTAGGAACTCTGAAGAGGATAATAAGCCAAGGAGTTGCGCAGGNGATCTTGAGGACAAAGTTCTTGATGTGCTGGTTAGGCATGANGAACTCAAGGACATGTTTGTTAAATATATAGTCCAGCCAAAGGAGAGAGATTTGCTTGAGGGTTTTGGCTCTTGA

Protein Sequence

>Glyur000804s00033423.1
MSEEGDKGANFGDDNNLGLKPENPITIDFDDSDEEEHGVEESSGDDDEDDDDDDEDESEDNETSDEDFIGDDEGSESCSSEDSSTSYEDEDDEEDWRRYSKERRRKSSGICTENGENERRRYKRVVEEGGFENTPSSVNNDEWKHGDCSSVTSRAREMKGSSSNSKPHEEVEKKQEEKGKRMVVENVSDDDDDDDDDVGAVGGGGYHKSSSEDGAQKGKKKKDSFIRGNNTQSVPVMEETGDSTMVNESERNNANANGNGRVNVDSHEGKEHSGRGLGVRRRSDSSLPEKXEKMGDSAEHEIMENKRRWHKDGIKTNNREKARVDDKTGDKEVLLHHKVRRMPFRQKQLRLLELLAECYIGKKNSMKGDTNGLEEKDGGDVHKLETPSRGETLLSIWSLKKDELPVQKSKXEEELETLWSEMDKLIAEEQMDSLVGKXITNEDMQNLGCPNPHCKHDIYLDLEIGYYCRYCGWVSVEIRDISPPVLDRSPYEGSGRRLSAGGGADASLFDEDHFNVCGGDSDSDPVFSHKEGTVWDLIPDIKQSLYPHQQQGIEFIWKNLAGSIDLHKLKRADPCREGGCIISHAPGTGKTRLTMVFLQTYLRVFPKCLPVIVAPASLLLTWEDEFMKWDIGVPFHNLNNPELSGKEHVDATDVVDWCKSQKQNKDAIRMVKLCSWFKEKSILGISYSLYEILAGEKSQDEKKTRKKNGSLRKQNGRDNNENGVMGKVLREVPGLLVLDEGHTPRNQHSRIWKVLSKIQTQKRIILSGTPFQNNFRELYNTLSLVKPSFPDMMPPELKKFCQNRLMQERKASKEMSWEPVSCGNPADDKINQLKSLMDSFVHIHKGNILQKNLPGLRXCVLVLKPESLQKEILESIECSQNTLDFDYKLAVVSVHPSLFLPCSLTEREESVVDKEQLENLRLDPYGGVKTRFLVEFVRLCDTLNERVLVFSQFIDPLDLIIAQLKSYLNWSDGKEVLSMRGKLGQQKKQSLIHRFNDANSQAKIMLASTKACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLTQGTAECTKYYKQAKKDKLSELVFSARNSEEDNKPRSCAGDLEDKVLDVLVRHXELKDMFVKYIVQPKERDLLEGFGS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00804	56401	60910	-

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10875	RAD54L, RAD54	EC:3.6.4.-	Homologous recombination	map03440

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000804s00033423.1	PF00176.18	SNF2_N	548	876	5.30E-24
Glyur000804s00033423.1	PF00271.26	Helicase_C	975	1047	1.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.021
SRR1783600	control	0.021
SRR1783602	moderate drought stress	0.011
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.095
DRR006520	Root Summer glycyrrhizin high producing strain	0.094
DRR006521	Root Winter glycyrrhizin high producing strain	0.147
DRR006522	Root Winter glycyrrhizin high producing strain	0.159
DRR006523	Root Summer glycyrrhizin low producing strain	0.450
DRR006524	Root Summer glycyrrhizin low producing strain	0.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.035
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.007
SRR9715739	Root	0.000
SRR9715742	Root	0.018
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.714
SRR8749028	MeJA induced 9h	0.818
SRR8749029	MeJA induced 9h	0.493
SRR8749030	Uninduced	0.574
SRR8749031	Uninduced	0.912
SRR8749032	Uninduced	0.551

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.010