Gene detail

Gene detail information of Glyur000803s00029853

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04090.1	9.00E-55	small and basic intrinsic protein 1A
NR	XP_003624577.1	6.36E-142	Aquaporin SIP1-2 [Medicago truncatula]
Swissprot	tr\|Q9ATM2\|SIP12_MAIZE	1.00E-86	Aquaporin SIP1-2
trEMBL	tr\|G7KYE4\|G7KYE4_MEDTR	2.00E-142	Major intrinsic protein (MIP) family transporter {ECO:0000313\|EMBL:AES80795.1}

Sequence

Transcript Sequence

>Glyur000803s00029853.1
CGTTGGATCCTACCCATATGGTTAGGTGAATCATTCGCTTTCTCTTCCTCATTCTCTATCAACACCACCAAAGACCCGTGCTTCCTCAATTCTCAACTCATCACTCATACAAAAAGACCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCGGTCTCTCTCTGATGTCTCCATTGGTCCTTCTGTAACTCATCTTTGGTACTATCATCCATAGAGAGAGACAAGAGAGAGCGACCCAGTGACAAAAATCAAAATCAACAAAAAAAAGAAGAAGAAAAGAGCAAATTTTTTAAAGATGGGTGGTGGTGGTGGTGCTATAAAAGCAGCAATTGGGGATGGAGTGTTGACATTCATGTGGGTGTTCTGTTCCTCCATGTTGGGAATAGCTTCAANCACCATAACCAAAGCCCTNGACNTTCAAAACATCTCCTACAATGGTTTCCCTTACCCTTCTTTCTTAGTCANCACTACACTAGTTTTTCTCCTTGTCTTCATCTTCTCCCTCATCGGCAATGCAATGGGTGGCGCCAGCTTCAACCCCACCGGAACCGCTGCCTTTTATGCCCTTGGCCTCGGTTCCGACACCCTCATCTCATTGGCCCTCCGTTTCCCTGCTCAGGCACTTGGTGCTGCGGGTGGTGCAATGGCAATAATGGAGGTGATTCCTTCAAAATACAAGCACATGATTCGTGGTCCTTCTTTGAAAGTGGACTTGCATACTGGGGCTCTTGCTGAAGGGGTTTTGACATTCACAATCACTTTTGCTGTCCTCTTCATATTCCTAAAAGGCCCTCGTAATGACTTAATGAAGATTTGGTTGCTGGCTATGTCAACTGTCACTATGGTCATGCTTGGGTCTGCATATACTGGGCCATCCATGAATCCTGCCAATGCCTTTGGTTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGCCCCTTCACTGGAGCAATATTGGCTGCTTGGCTTTTCCGTGCCATCTTCCCCCCACCAGAAGAACCAAAACAGAAGAAAGCATGAAGTGGCATAATAGATTTGTTTCTTATGTCANCTATCAAGCACCATGATAGTGTTACATCATTTCTGGTTTATTCTCTCTTCTATATGTGTTAGGGACTCCATCTTTCAGCTTATAAAGGAACATCTTTAGTTAGGGACAGTATCAAATTTGAAATTGTTAATGCTAAATTACTGGGTCATGCATAGCCAATATATTGGGTATCCACTTGGACTCTATGGAATTGTAGTATCTAGGCTGGATATTGNTTTGATTCACTTTGCTACCAACACTCTCTAATACACACTATTTTCAAATACATTCTCAATGATTGGGTAAAATTTACGTGGTTCCATTAAGTGTTTGTTTGGATAGGATTTTAGAATCCTGTTGCATTAGTATTTGGCTAATATTTAAACACTCTTTTAAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00803	79699	83944	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000803s00029853.1	PF00230.15	MIP	8	234	1.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.658
SRR1783600	control	33.627
SRR1783602	moderate drought stress	29.858
SRR1811619	moderate drought stress	29.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.556
DRR006520	Root Summer glycyrrhizin high producing strain	19.512
DRR006521	Root Winter glycyrrhizin high producing strain	3.973
DRR006522	Root Winter glycyrrhizin high producing strain	4.031
DRR006523	Root Summer glycyrrhizin low producing strain	15.141
DRR006524	Root Summer glycyrrhizin low producing strain	15.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.281

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.837
SRR2868004	Drought Stress (root)	28.653
SRR2967015	Control (root)	36.581

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.598
SRR9715740	Leaf	17.727
SRR9715741	Leaf	24.413
SRR9715739	Root	39.729
SRR9715742	Root	32.139
SRR9715743	Root	33.689

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.263
SRR8749028	MeJA induced 9h	11.712
SRR8749029	MeJA induced 9h	11.706
SRR8749030	Uninduced	14.934
SRR8749031	Uninduced	17.187
SRR8749032	Uninduced	8.643

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.841
SRR8400027	Control - Root	46.203