Gene detail

Gene detail information of Glyur000803s00029849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15010.1	4.00E-92	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004493133.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9LFQ4\|PP383_ARATH	9.00E-117	Pentatricopeptide repeat-containing protein At5g15010, mitochondrial (Precursor)
trEMBL	tr\|G7KYE7\|G7KYE7_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES80798.1}

Sequence

Transcript Sequence

>Glyur000803s00029849.1
ATGATCAGAAGCTGCAGATCTAACCTATCTGTTTTCCCTCTTGTGCTATTACGCATCAACCAACAAAACTCACTCGCTATTATTAATCACTGTGATATAGTTCAGCAACCCTTTATGAGTGTGGNTTTCAATGTTTTTAACCCTTCAAATACTGACACCTTTTTAGCTCCAACGAAATTTGGTTTCTCTGTGAGGCTCTTTTCTACCCTTGGGGTTCCCACTAATGCCCCTGCATTAGGATTGGATGAGGCCTTGAGTGATGGTGATGATGATGATAATGATGGTGTGAATGATGATGATGACCATGACNAGAATGATGATAAGAATAGTACTCNGTTACACTTAAGGGATGATGGTCTTACCCAAGATGTTAAAACTATTTTGGATATAGTGCATGAGCCGGGTTCTGGACCGTCTGAAATCAAGCACAAGCTTGAGCATTGCGGAGTTAGGGTGTCATCGGAGCTGGTTGTGGAGGTCCTTTCGAGAATTCGCAATGATTGGGAAGCGGCTTTCACCTTTTTCTTGTGGGCTGGGAAGCAACCAGGGTATGCTCATTCGGTTCGCGAGTACCATTCAATGATCTCCATACTTGGCAAAATGAGGAGGTTTGATACTGCTTGGGCCTTAGTTGAAGAAATGAGAGGAGGCAGAACTGGTGAATCTCTTGTCACCCNGCATACTCTCTTGATTATGATCAGGAAATACTGTGCTGTGCATGATGTTGGAAGGGCTATAAACACTTTCTATGCTTTTAAGCGGTTTAACTTTCAAGTTGGATTAGAGGAGTTTCAAGGCCTTCTTTCTGCCCTTTGCCGGTATAAGAACGTGCAGGATGCCGAGCACTTGCTATTCTGCAACAAAAATGTTTTCCCATTGGACACTAAAAGCTTTAACATCATTCTGAATGGATGGTGCAATTTGATTGTTAGCACGCNTCACGCGGAGAGGATTTGGCAGGAGATGAGCAAGAGAGGAATCCAACATGANGTTGTCTCCTATGCAAGTATCATTTCTTGCTATTCTAGAACTTCTAAACTTTATAAGGAAGAAATATTTGAGCTCTTGGACAAAATGAGAGAGCTGGGATGCCAGCCAACTATTGAGACCTACATAATGTTGATAAGAAAGTTTTGCCGGTGGCGCCAGCTTGATGATGTCTCGAAGATATGGAATGCGATGAGGGAAAATGGAGTCAGNCATGATCGTAGCTCTTATATCGTACTGATTCATGGTCTGTTTCTGAATGGAAAGCTGGAGGAAGCACACAAATATTATATAGAGATGCTAGAGAAAGGCTTCTTCCCTGAACCGAAGACAGAAGAAATGCTTCAGGCATGGCTTTCTGGAAAACAGGTAACAGAGGGCCAGGTGACAGATTTAGACCACAATCAATTGGATAATGATACTCTTAAGAAGAAAGTCAAAGCCATACCCAGTAAATTTGATAGGGAAAAAGAGTTTCTTCGCGAACCTGAGATCAGAAGAGTAACAAGAGAACGGGGCTTTTCTTTCTGTGAGGAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00803	59862	61688	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000803s00029849.1	PF01535.15	PPR	191	215	0.013
Glyur000803s00029849.1	PF13041.1	PPR_2	331	380	8.30E-09
Glyur000803s00029849.1	PF01535.15	PPR	405	434	2.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.964
SRR1783600	control	2.101
SRR1783602	moderate drought stress	1.846
SRR1811619	moderate drought stress	1.855

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.140
DRR006520	Root Summer glycyrrhizin high producing strain	4.021
DRR006521	Root Winter glycyrrhizin high producing strain	2.366
DRR006522	Root Winter glycyrrhizin high producing strain	2.067
DRR006523	Root Summer glycyrrhizin low producing strain	2.150
DRR006524	Root Summer glycyrrhizin low producing strain	1.925
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.752
SRR2868004	Drought Stress (root)	4.678
SRR2967015	Control (root)	4.047

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.617
SRR9715740	Leaf	0.796
SRR9715741	Leaf	0.754
SRR9715739	Root	0.452
SRR9715742	Root	2.304
SRR9715743	Root	2.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.614
SRR8749028	MeJA induced 9h	2.191
SRR8749029	MeJA induced 9h	1.446
SRR8749030	Uninduced	0.493
SRR8749031	Uninduced	1.028
SRR8749032	Uninduced	0.547

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.849
SRR8400027	Control - Root	3.959