Gene detail

Gene detail information of Glyur000802s00023737

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45660.1	2.00E-35	AGAMOUS-like 20
NR	KEH19008.1	7.29E-65	MADS-box transcription factor [Medicago truncatula]
Swissprot	tr\|O64645\|SOC1_ARATH	2.00E-42	MADS-box protein SOC1
trEMBL	tr\|A0A072TQ92\|A0A072TQ92_MEDTR	3.00E-65	MADS-box transcription factor {ECO:0000313\|EMBL:KEH19008.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00802	109385	112834	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000802s00023737.1	PF01486.12	K-box	83	145	1.20E-19

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.424
SRR1783600	control	1.394
SRR1783602	moderate drought stress	2.139
SRR1811619	moderate drought stress	2.223

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.215
DRR006520	Root Summer glycyrrhizin high producing strain	10.951
DRR006521	Root Winter glycyrrhizin high producing strain	26.082
DRR006522	Root Winter glycyrrhizin high producing strain	24.186
DRR006523	Root Summer glycyrrhizin low producing strain	2.255
DRR006524	Root Summer glycyrrhizin low producing strain	2.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	76.222

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.397
SRR2868004	Drought Stress (root)	13.801
SRR2967015	Control (root)	12.354

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.608
SRR9715740	Leaf	48.701
SRR9715741	Leaf	64.222
SRR9715739	Root	1.107
SRR9715742	Root	1.947
SRR9715743	Root	1.920

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.219
SRR8749028	MeJA induced 9h	3.031
SRR8749029	MeJA induced 9h	2.077
SRR8749030	Uninduced	8.483
SRR8749031	Uninduced	1.512
SRR8749032	Uninduced	3.975

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.100
SRR8400027	Control - Root	0.484