Gene detail

Gene detail information of Glyur000802s00023729

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42750.1	5.00E-117	DNAJ heat shock N-terminal domain-containing protein
NR	XP_003539555.1	0	PREDICTED: uncharacterized protein LOC100786494 [Glycine max]
COG	YP_007101507.1	8.00E-23	ferredoxin-like protein [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q8GYX8\|DNJ10_ARATH	2.00E-11	Chaperone protein dnaJ 10
trEMBL	tr\|I1LUP3\|I1LUP3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G33970.1}

Sequence

Transcript Sequence

>Glyur000802s00023729.1
ATGGAGGAGAAAGCGGCGGTGGGTGAGTTCAACTCCTCCACCATACTGCTTTTGGCTTCATTTCATTTCACTGGAATTGTTCTTAGAACCATGGCTCAGTTACTGTCTCCATTGTACGGGGAGGCTCTCAAAATCCACCACAACCCATCACTGAATCCGTGTTCAAGAAGCTCATGGCGGATGCTGGCGAAGGCTGCAGCAAGTCCTTGTTCCTTTGTGACTCAAAGTGGTAAGAGAAGAAGAGGCTGTGGTGTTGGGAGGTTAAGAGTTGCTGCTGAGGACTCAGTTTCTCCCACTGATACTGCTGCTGCTGCAGATGACTATTATGCTGTTCTGGGTCTGCTTCCAGATGCTACACCAGCTCAGATCAAGAAGGCATACTATGATTGCATGAAAGCTTGCCATCCAGACTTGAGTGGCAATGATCNCGAGACCACAAATTTCTGCATGTTCATCAATGAAGTCTATGCGGTGCTCAGTGATCCCATCCAGCGGAGGATTTATGATGAAATTCATGGGTATTCTTTAACTTCGATCAATCCTTTCCTGGATGATTCTAGCCCAAAGGATCATGTTTTTGTTGATGAATTCAGCTGCATAGGCTGCAAAAATTGTGCCAATGTAGCCTCTGATGTGTTTGCAATAGAGGAAGACTTTGGTAGAGCCAGAGTATACAACCAATGCGGGAACCCTGAATTAGTTCAACAGGCTATTGACAGTTGCCCTGTTGACTGCATTCATTGGACATCTGCTGCACAACTATCATTACTTGAAGATGAAATGCGCCGTATAGAAAGAGTCAATGTTGCCCTAATGGTTTCAGGAATGGGGTCAGCATCATTTGATGTTTTCAGAATGGCAAGTTCTCGATGGGAAAAGAGACAGTNAAAAGTCTTGGAACAAGCAAAATTGAGAATGATGAGGCAGCAACGTTCCGATCAAACAGATTCATACTGGGACAATCTTTGGGGCAAACCAAAAGACTATCAAAATTCAGAGGAGGAAGTTAAAGAAAGAGCAAAAAGAGCTGCTGCTGCAGCACGAAGATGGAGGGAATACTCAAGGAGGGGTATTCATAAACCTCCCACTTTTAAACTTCCAGANGCAGGCCCTACCAAGGACAAGTGAGTGAAGTGACCAAAACATTCCCTATACCTTCAATAACATTAATTCAGTCCCATGTAATTACTTTATTTATAGACTCTCAGTAAAACTAATGAGGTGTTTCTCACTTAAATAGCCGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00802	67853	72925	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000802s00023729.1	PF00226.26	DnaJ	107	169	2.90E-18
Glyur000802s00023729.1	PF13459.1	Fer4_15	192	248	9.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.914
SRR1783600	control	12.440
SRR1783602	moderate drought stress	17.440
SRR1811619	moderate drought stress	17.192

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.608
DRR006520	Root Summer glycyrrhizin high producing strain	17.299
DRR006521	Root Winter glycyrrhizin high producing strain	20.017
DRR006522	Root Winter glycyrrhizin high producing strain	19.833
DRR006523	Root Summer glycyrrhizin low producing strain	16.249
DRR006524	Root Summer glycyrrhizin low producing strain	16.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.463
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.974

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.754
SRR2868004	Drought Stress (root)	15.301
SRR2967015	Control (root)	19.892

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.255
SRR9715740	Leaf	54.916
SRR9715741	Leaf	44.847
SRR9715739	Root	3.579
SRR9715742	Root	9.039
SRR9715743	Root	7.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.462
SRR8749028	MeJA induced 9h	11.483
SRR8749029	MeJA induced 9h	8.441
SRR8749030	Uninduced	5.802
SRR8749031	Uninduced	1.528
SRR8749032	Uninduced	2.851

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.671
SRR8400027	Control - Root	24.284