Gene detail

Gene detail information of Glyur000802s00023723.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30980.1	0	SHAGGY-related protein kinase dZeta
NR	XP_004487575.1	0	PREDICTED: shaggy-related protein kinase zeta-like [Cicer arietinum]
COG	YP_008149401.1	5.00E-23	hypothetical protein SCE1572_14835 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q39010\|KSG6_ARATH	0	Shaggy-related protein kinase zeta
trEMBL	tr\|G7IM77\|G7IM77_MEDTR	0	Shaggy-like kinase dzeta {ECO:0000313\|EMBL:AES66963.2}

Sequence

Transcript Sequence

>Glyur000802s00023723.1
GTGTTTGTGACTTTGTGTAACTTCTGACATGGCCTCTATGCCGTTGGGGCCGCACCACCATCAACCACCGCAACAAGCACCTATGCCGTTACCGTTACCGTTACCTCCGCCACAGTTGCCGCAGCCGCAAGCAGAGAATGACCCGCTGAAGGCGGCGTCTGGCGGCGTCTCCAACATGGAGACCGATAAGGAAATGTCATCTACTGTCGTTGATGGTAATGATGCAGTCACTGGTCACATAATCTCAACCACAATTGGAGGCAAAAATGGTGAACCTAAACGGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGGCAGTGGCTATAAAGAAGGTCTTGCAAGACAAGCGGTACAAAAATCGTGAACTGCAGTTAATGCGNGTGATGGATCACCCAAATGTAATTACCTTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACAATGTACCGAGTTCTAAAACACTACAATAGTATCAACCAGAGAATGCCCCTAATCTATGTCAAATTATATACATATCAAATNTTTAGGGCACTAGCATATATCCATACTGTACCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTATTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATCTGTTCACGATACTATCGGGCCCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCATTGTTCCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATCATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCCCAGATTAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTGCAGTGCTCTGGACGCATGTGCACATTCTTTCTTTGATGAGCTTCGAGAGCCCAATGCCCGGCTACCCAATGGTCGTCCTCTGCCTCCGCTTTTCAACTTCAAACAGGAATTAGCTGGAGCATCCCCTGAACTGATCAATAAACTCATCCCAGAGCATGTGAGGCGGCAAACTGGTCTTGGCTTCCCATATCCCGGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00802	41711	46174	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14502	BIN2	EC:2.7.11.1	Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000802s00023723.1	PF00069.20	Pkinase	92	373	1.40E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.840
SRR1783600	control	94.908
SRR1783602	moderate drought stress	75.389
SRR1811619	moderate drought stress	78.631

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.368
DRR006520	Root Summer glycyrrhizin high producing strain	60.117
DRR006521	Root Winter glycyrrhizin high producing strain	48.542
DRR006522	Root Winter glycyrrhizin high producing strain	49.746
DRR006523	Root Summer glycyrrhizin low producing strain	48.433
DRR006524	Root Summer glycyrrhizin low producing strain	47.903
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.397
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.495

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.380
SRR2868004	Drought Stress (root)	38.327
SRR2967015	Control (root)	40.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.752
SRR9715740	Leaf	17.200
SRR9715741	Leaf	20.872
SRR9715739	Root	30.129
SRR9715742	Root	44.568
SRR9715743	Root	42.362

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.078
SRR8749028	MeJA induced 9h	60.316
SRR8749029	MeJA induced 9h	36.407
SRR8749030	Uninduced	22.630
SRR8749031	Uninduced	8.418
SRR8749032	Uninduced	9.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.080
SRR8400027	Control - Root	56.670