Gene detail information of Glyur000802s00023719.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58680.1 | 2.00E-64 | multiprotein bridging factor 1B |
| NR | AFK47741.1 | 3.99E-91 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LXT3|MBF1B_ARATH | 3.00E-81 | Multiprotein-bridging factor 1b |
| trEMBL | tr|I3T5E9|I3T5E9_LOTJA | 1.00E-91 | Uncharacterized protein {ECO:0000313|EMBL:AFK47741.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00802 | 24538 | 26967 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MBF1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000802s00023719.1 | PF08523.5 | MBF1 | 69 | 139 | 7.70E-24 |
| Glyur000802s00023719.1 | PF01381.17 | HTH_3 | 147 | 197 | 9.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 370.497 |
| SRR1783600 | control | 374.678 |
| SRR1783602 | moderate drought stress | 476.023 |
| SRR1811619 | moderate drought stress | 481.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 358.989 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 360.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 388.379 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 374.170 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 284.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 284.641 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 292.614 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 298.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 317.023 |
| SRR2868004 | Drought Stress (root) | 285.051 |
| SRR2967015 | Control (root) | 297.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 381.361 |
| SRR9715740 | Leaf | 339.791 |
| SRR9715741 | Leaf | 381.055 |
| SRR9715739 | Root | 108.633 |
| SRR9715742 | Root | 199.264 |
| SRR9715743 | Root | 162.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 394.087 |
| SRR8749028 | MeJA induced 9h | 336.303 |
| SRR8749029 | MeJA induced 9h | 389.322 |
| SRR8749030 | Uninduced | 412.359 |
| SRR8749031 | Uninduced | 286.959 |
| SRR8749032 | Uninduced | 373.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 315.150 |
| SRR8400027 | Control - Root | 289.249 |