Gene detail

Gene detail information of Glyur000802s00023717

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38300.1	1.00E-31	myb-like HTH transcriptional regulator family protein
NR	XP_004487568.1	2.49E-127	PREDICTED: uncharacterized protein LOC101500041 [Cicer arietinum]
Swissprot	tr\|Q700D9\|MYBF_ARATH	3.00E-28	Putative Myb family transcription factor At1g14600
trEMBL	tr\|A0A072VAU2\|A0A072VAU2_MEDTR	3.00E-116	Myb-like DNA-binding domain, shaqkyf class protein {ECO:0000313\|EMBL:KEH38867.1}

Sequence

Transcript Sequence

>Glyur000802s00023717.1
ATGGCTGAGACGGAGAGAATTTGCATATCTGATGAAGACAAGAGTAGTGAAGGTAGCGGTAATATTGGAGTAGTGAGTCGACCCTCTTCTCCAAGTCCCAGAAAACGTTCGTTCTTCGACTTGAACGAGGAAGCTGTAGTGGATGTTGATGATGATGGGATAAGTGATGGGCCGTGTGGTGAGAATATTTATGAGATGATGAGCAACATTAATGACAACGACATCAACATGTCATCGCCAGAAGGGAATTTGAGTAGCAGCAGCAACAATAATAATGATTGTTCTAGTGATCAAGAAGGGAAAGGGCGCTGTGGAACGTCGTCTACGGTTAGGCAATACGTGAGGTCCAAAATGCCAAGGCTCCGTTGGACTCCTGATCTCCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGACAAGATAGAGCAACACCCAAGTTGGTTCTACAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTCAAGAGTCATTTGCAGATGTATCGGAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTATCCCAAAAAAGGGCAATGCAAGGAAGGCATCACATTTTGGATATGTACGGAGGAAGATCACTTAATGTGCAAGGTCGACACTTTGGGGTTCATAACAACGTCTATCTGCAGCCGTCATCTCCTCTATTGAAACAATCGTATAATGAAACCAAAGCTCATCGCACTTCAAGATTTCACCAGAGTGGGCTTTTCAATAATCACATGATCATGAGATCAAGTTCANTGTGGGACAATGATTTATACGAGGCAAGCTCCAATGTATTTGATGTAAAGGATGCAANAATAAGAAATGGACCTATTAGGTCTAGCCAAGTAAGCCAAATATTAGTTGAAGAAAAGAAGTGGNCTCCTCGGGGAGTGGCTGGATCACAAGGAAGTGAAAATAAACATGAATCTATAAGCATATCTCGGGATGACCAGTACTACAGTGCACAACCTTTTCCATGGAGCACCACCTACTCTAGTTCTATCAATAATCAATATTATCAACGTAGTTCCTGCGTTCCTGTCTTCACAGCTGGTCACACCATGTTTGGTTCTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00802	14247	16038	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000802s00023717.1	PF00249.26	Myb_DNA-binding	120	171	4.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.435
SRR1783600	control	0.505
SRR1783602	moderate drought stress	0.105
SRR1811619	moderate drought stress	0.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.101
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.511
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.501

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.992
SRR2868004	Drought Stress (root)	23.549
SRR2967015	Control (root)	22.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.402
SRR9715740	Leaf	0.317
SRR9715741	Leaf	0.408
SRR9715739	Root	0.087
SRR9715742	Root	0.500
SRR9715743	Root	0.262

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.661
SRR8749028	MeJA induced 9h	11.386
SRR8749029	MeJA induced 9h	12.564
SRR8749030	Uninduced	7.634
SRR8749031	Uninduced	15.803
SRR8749032	Uninduced	5.571

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.933
SRR8400027	Control - Root	1.383