Gene detail

Gene detail information of Glyur000801s00027044

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55770.5	2.00E-85	GATA type zinc finger transcription factor family protein
NR	AFK39062.1	1.06E-125	unknown [Lotus japonicus]
Swissprot	tr\|Q9M047\|WLI2B_ARATH	6.00E-108	LIM domain-containing protein WLIM2b {ECO:0000305}
trEMBL	tr\|I3T8A1\|I3T8A1_LOTJA	4.00E-126	Uncharacterized protein {ECO:0000313\|EMBL:AFK48743.1}

Sequence

Transcript Sequence

>Glyur000801s00027044.1
ATTTGATCAATAATGTACGTTCATTGTTGATCAAGAGCAGAACGTACATTGTTTGACATTATGGTCATTATTGATCATCATCATCATTTGATTTGTTATCAGTATCATATATCCACAATATCCATCCTCCTCTTGAGTCCTTAGTTCTTCACAACCTCACTGATCCACCATTTCTCACTTTTCTCTCAACAAGCTAAGGTTATTGCAAAAGGCAAATCTAAGAGGTTACTGAGTTGGGGCATTTGGAACTGGTGTTTAATTGAGTTTGGTGAAGTTGGATCCAAAGGGCACAACAGAGATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCTTGTGACAAAACAGTATATCCCGTTGATCAGCTATCTGCTGATGGCACTGCTTACCATAAAGCTTGCTTCAGGTGTTCTCACTGCAAAGGAACGTTAAAGCTGAGCAACTATTCCTCGATGGAAGGGGTTCTTTACTGTAAGCCTNATTATGAGCAGCTCTTCAAGGAGACAGGAACTTTCAAGAAGAATTTCCAGTCACCTGCAAAGGTAGCTGACAAGACAACTCCTGAGCTGACAAGGTCCCCTAGCAAAGCTGCTAGCATGTTTTCTGGGACACAAGAAAAGTGTGCCACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGTCTGGCCTATCACAAATCATGTTTCAANTGCTCACATGGTGGCTGTCCCATAACGCCATCGAATTATGCAGCCCTTGAGGGGGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTACAATCATCTCATTAAGTCTGCATCAATGAAACGAGCAGCATCCTCTGTTTCACAATCTTGAAAATCTTGGTGCCTTGTTTTACATTTTCGGTCTGTGGTGCAAAGTGTTTGTTTGTTTTTCATTCTGATTCTACNTATCACGATTTGATCCTTTCTTATTCACTTTACATGTGCGTGGCATCACTGGTGTGCAAATTATATATCTTATGATGTATTTGTCCAATACACAATCAGTATTAATAGTGTGATTTACAAGATGTCTTGTGCCTGAAGTTCGTGTACACACTTTTAAATCCACTGAATTGCGGTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00801	76526	79224	+

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000801s00027044.1	PF00412.17	LIM	10	65	5.20E-14
Glyur000801s00027044.1	PF00412.17	LIM	108	163	2.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.392
SRR1783600	control	8.069
SRR1783602	moderate drought stress	1.577
SRR1811619	moderate drought stress	1.687

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.767
DRR006520	Root Summer glycyrrhizin high producing strain	16.692
DRR006521	Root Winter glycyrrhizin high producing strain	0.096
DRR006522	Root Winter glycyrrhizin high producing strain	0.096
DRR006523	Root Summer glycyrrhizin low producing strain	4.339
DRR006524	Root Summer glycyrrhizin low producing strain	4.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.572

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.141
SRR2868004	Drought Stress (root)	6.108
SRR2967015	Control (root)	12.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.291
SRR9715740	Leaf	0.226
SRR9715741	Leaf	0.233
SRR9715739	Root	8.039
SRR9715742	Root	1.167
SRR9715743	Root	1.777

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.032
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.005
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.348
SRR8400027	Control - Root	26.689