Gene detail

Gene detail information of Glyur000801s00027038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38080.1	0	Laccase/Diphenol oxidase family protein
NR	KHN20872.1	0	Laccase-4 [Glycine soja]
COG	YP_004776510.1	1.00E-26	multicopper oxidase type 3 [Cyclobacterium marinum DSM 745]
Swissprot	tr\|O80434\|LAC4_ARATH	0	Laccase-4 (Precursor)
trEMBL	tr\|I1M7Y1\|I1M7Y1_SOYBN	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur000801s00027038.1
AACGAAAAGAGATTAATATAAGAATCAGGGAACAACTGAAGAGACGGAGAAAGAAAAAGATATTAATTGTTGAAGAGAATGGAGCCACGCCTTCTGGCAATTCTTTTGGTGGNTCTTTCATTTCCACTATTTGTTCAGTCCTTGGTGCGTCATTACCAGTTTAGTGTGGTATTGAAGAATGCAACAAAGCTTTGCTCAACAAAATCTATCGTCACAGTCAATGGACAATTCCCAGGGCCAACTCTCTATGCAAGGGAGGATGATACTGTAATAGTAAGGGTCACTAACCATGTAGAATACAATATCACAATCCACTGGCATGGAATCAAACAGCTTCGAACCGGTTGGTCTGATGGGCCAGCATATGTGACACAATGCCCAATCCAAACAGGGCAGAGCTATGTGTACAACTTCACCATCACAGGTCAAAGAGGCACACTTCTATGGCATGCACATATCACTTGGCTAAGGGCCACAGTGCATGGTGCCATTGTCATTTTGCCAAAACGAGGCATTCCTTATCCATTTCCTAAACCTGATAAAGAAAAGATAATCATTCTAGGCAAGTTTTGTTGTGAATGGTGGAAATCAGATGTTGAAGCTGTGGTCAATCAGGCCACAAATTCTGGTTTGCCACCAAACATATCAGATGCCCACACCATCAATGGTCATCCAGGACCAGTTCCTAGTTGCACTTCTCAGGGTTACACTCTGCATGTTGAAAGTGGCAAGACCTATCTGCTGCGCATTATAAATGCAGCCTTAAACGATGAGCTATTCTTCAAAATCGCGGGGCACAAACTAACAGTTGTTGAAGCAGATGCATCATACCTCAAACCCTTTGAGACTGACACAATATTTNTGAGCCCAGGCCAAACCACAAACGCCCTTTTAACTGCAAACCAAGGTGTTGTTGGAAAGTACTTAATAGCAGTGACACCTTTCATGGATGCCCCTATAAGCTTTGACAATGTTACTTCAATTGCCACACTTCGCTACAAAAACACACCACCTTATTATCCTAAAACAACTCTAACCAACATTCCTCCACTGAATGCAACTCCAATAACAAGTGCCTTCACTGATTCCCTTAGAAGCCTTAACTCAAAAGACTACCCTTCAACAGTTCCATTGACCATTGACCACTCTCTTTTCTTTGTCATAACTGTTGGGATTAATCCATGTGATACATGTGTGAGNGGGATCAAGCTTGTGTCTGCTATTAACAACACCACCTTTTTGATGCCTACCACATCACTTCTTCAAGCACATTACTTTAACATAAAGGGTGTTTTCACTGATGATTTCCCTTCAAACCCACCAATGGTTTTTAACTACACTGGCACTCAACCGGCTAATCTACACACCAATAATGGCACAAGACTTTACAGATTGGATTTCAATTCAACTGTTCAGGTTGTTCTCCAGGGAACTGCAATGATAGCACCAGAAAATCACCCTTTTCATTTGCATGGGTACAATTTCTTTGTTGTTGGGCAAGGGTTAGGGAATTTTGATCCTGAAGAGGATCCACTGAGGTTTAACCTTGTTGACCCAGTTGAAAGAAACACTTTGTCTGTACCAAATGGTGGATGGATGGCAATCAGATTCAGGGCAGACAATCCAGGTGTTTGGTTCCTGCATTGCCACTTAGAGGTACACACCACATGGGGACTTAAGATGGCTTTCGTAGTAGACAATGGGAGAGGCCCCAATGAATCCACGCTTCCACCACCCAACGACCTTCCAAAATGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00801	47226	51905	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000801s00027038.1	PF07732.10	Cu-oxidase_3	33	143	3.80E-42
Glyur000801s00027038.1	PF00394.17	Cu-oxidase	167	309	2.10E-40
Glyur000801s00027038.1	PF07731.9	Cu-oxidase_2	411	542	1.60E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.834
SRR1783600	control	12.943
SRR1783602	moderate drought stress	1.839
SRR1811619	moderate drought stress	1.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.758
DRR006520	Root Summer glycyrrhizin high producing strain	12.807
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.504
DRR006524	Root Summer glycyrrhizin low producing strain	2.617
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.181
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.351

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.666
SRR2868004	Drought Stress (root)	6.639
SRR2967015	Control (root)	6.422

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.428
SRR9715740	Leaf	2.647
SRR9715741	Leaf	2.377
SRR9715739	Root	0.752
SRR9715742	Root	4.504
SRR9715743	Root	3.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.260
SRR8400027	Control - Root	10.529