Gene detail

Gene detail information of Glyur000800s00036734.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08900.1	3.00E-159	arginase
NR	AFK41313.1	0	unknown [Medicago truncatula]
COG	YP_591193.1	2.00E-66	agmatinase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|P46637\|ARGI1_ARATH	0	Arginase 1, mitochondrial (Precursor)
trEMBL	tr\|I3SM21\|I3SM21_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK41313.1}

Sequence

Transcript Sequence

>Glyur000800s00036734.1
GAAGAGAGAAATGTCGAAGATCGCACGCAAAGGCATCCATTACATGCAGAAACTAAATGCAGCAGCAAATGTATCCAGTGCTTTGCTAGAGAATGGCCAAAATCGTGTGATAGATGCTTCGCTTACACTTATTAGAGAAAGAGCAAAGCTTAAGGCAACTTTGCATGAAAGCAATATGAGCTCAGAAATTGCTTTTCTCCAGGGAGAACTTGTGCGTGCTTTGGGAGGTGCCGTAGCAACTTCATCTCTTCTCGGAGTTCCTTTGGGACATAATTCATCATTCCTTCAAGGGCCTGCATTTGCGCCTCCTCGCATTAGGGAGGCCATTTGGTGTGGTAGCACAAACTCGACAACTGAAGAAGGTAAGGAGTTACAGGACGCACGAGTGCTAACTGATGTCGGTGATGTCCCTATCCAAGAAATTCGCGATTGTGGGGTAGATGATGACAGATTGATGAATGTCATTAGTGATTCTGTCAAGTTAGTAATGGATGAGGCTCCATTACGACCCTTGGTTTTAGGTGGTGATCACTCAATATCATTTCCAGTCGTTAGAGCCGTCTCTGAGAAGCTTGGAGGACCACTTGATGTTCTTCATCTTGATGCNCATCCTGATAACTATCATGCCTATGAAGGGAACATTTATTCACACGCTTCTTCTTTTGCTCGAATCATGGAGGGAAACTATGTTGGTATAAGATCAATAACAACTGAAGGACGTGAACAAGGCAAAAAATTNGGGGTAGAGCAATATGAAATGCGAACATTTTCCAGAGATCGCCAATTTTTAGAGAACCTGAAACTAGGGGAAGGTGTTAAAGGCATATATATCTCAATAGATGTGGATTGTCTTGATCCTGCCTTTGCTCCGGGAGTGTCTCACATAGAACCAGGAGGTCTTTCTTTCCGTGATGTTCTCAACATCCTGCACAATCTTCAAGGTGATGTTGTTGCTGGAGACGTGGTCGAATTCAACCCGCAACGCGATACCGTCGATGGGATGACTGCCATGGTAGCTGCTAAGTTAGTGAGAGAACTGGCTGCCAAGATTGCAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00800	65258	69295	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01476	E3.5.3.1, rocF, arg	EC:3.5.3.1	Biosynthesis of amino acids	map01230
			Arginine biosynthesis	map00220
			Arginine and proline metabolism	map00330
			Amoebiasis	map05146

Gene Ontology

molecular_function

GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000800s00036734.1	PF00491.16	Arginase	79	343	1.80E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.367
SRR1783600	control	79.857
SRR1783602	moderate drought stress	99.766
SRR1811619	moderate drought stress	99.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.754
DRR006520	Root Summer glycyrrhizin high producing strain	70.478
DRR006521	Root Winter glycyrrhizin high producing strain	68.384
DRR006522	Root Winter glycyrrhizin high producing strain	66.388
DRR006523	Root Summer glycyrrhizin low producing strain	50.531
DRR006524	Root Summer glycyrrhizin low producing strain	51.026
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.725
SRR2868004	Drought Stress (root)	46.454
SRR2967015	Control (root)	45.096

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.659
SRR9715740	Leaf	34.447
SRR9715741	Leaf	32.458
SRR9715739	Root	55.865
SRR9715742	Root	42.605
SRR9715743	Root	48.987

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	75.397
SRR8749028	MeJA induced 9h	50.567
SRR8749029	MeJA induced 9h	57.006
SRR8749030	Uninduced	38.948
SRR8749031	Uninduced	40.917
SRR8749032	Uninduced	38.167

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.412
SRR8400027	Control - Root	82.330