Gene detail information of Glyur000798s00031098 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23620.1 | 2.00E-113 | Ribosomal RNA processing Brix domain protein |
| NR | XP_003542560.1 | 0 | PREDICTED: ribosome production factor 2 homolog [Glycine max] |
| Swissprot | tr|Q9LUG5|RPF2_ARATH | 8.00E-163 | Ribosome production factor 2 homolog |
| trEMBL | tr|I1LZF7|I1LZF7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G21500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00798 | 83472 | 85929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000798s00031098.1 | PF04427.13 | Brix | 33 | 231 | 4.00E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 44.063 |
| SRR1783600 | control | 44.314 |
| SRR1783602 | moderate drought stress | 34.520 |
| SRR1811619 | moderate drought stress | 34.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 92.667 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 94.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.609 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.387 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.455 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.186 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.866 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.451 |
| SRR2868004 | Drought Stress (root) | 45.697 |
| SRR2967015 | Control (root) | 44.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.367 |
| SRR9715740 | Leaf | 34.103 |
| SRR9715741 | Leaf | 27.691 |
| SRR9715739 | Root | 13.745 |
| SRR9715742 | Root | 53.995 |
| SRR9715743 | Root | 50.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 99.930 |
| SRR8749028 | MeJA induced 9h | 50.515 |
| SRR8749029 | MeJA induced 9h | 55.061 |
| SRR8749030 | Uninduced | 9.678 |
| SRR8749031 | Uninduced | 10.114 |
| SRR8749032 | Uninduced | 15.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.185 |
| SRR8400027 | Control - Root | 56.403 |