Gene detail information of Glyur000798s00031097 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16980.1 | 2.00E-56 | RNA polymerases M/15 Kd subunit |
| NR | XP_007138997.1 | 7.98E-75 | hypothetical protein PHAVU_009G256100g [Phaseolus vulgaris] |
| COG | NP_341839.1 | 2.00E-12 | DNA-directed RNA polymerase subunit M [Sulfolobus solfataricus P2] |
| Swissprot | tr|Q6NLH0|RPB9A_ARATH | 6.00E-72 | DNA-directed RNA polymerases II, IV and V subunit 9A |
| trEMBL | tr|V7B3G1|V7B3G1_PHAVU | 3.00E-75 | DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00798 | 74497 | 76306 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000798s00031097.1 | PF02150.11 | RNA_POL_M_15KD | 4 | 38 | 2.50E-13 |
| Glyur000798s00031097.1 | PF01096.13 | TFIIS_C | 75 | 113 | 8.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.202 |
| SRR1783600 | control | 0.140 |
| SRR1783602 | moderate drought stress | 4.149 |
| SRR1811619 | moderate drought stress | 4.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.137 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.955 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.272 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.072 |
| SRR2868004 | Drought Stress (root) | 0.207 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.097 |
| SRR9715740 | Leaf | 0.222 |
| SRR9715741 | Leaf | 0.716 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.631 |
| SRR9715743 | Root | 0.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.065 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.249 |
| SRR8400027 | Control - Root | 0.145 |