Gene detail information of Glyur000798s00031095 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19830.1 | 3.00E-50 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| NR | KEH42091.1 | 1.19E-86 | FKBP-type peptidyl-prolyl cis-trans isomerase [Medicago truncatula] |
| COG | YP_004861542.1 | 5.00E-17 | FKBP-type peptidyl-prolyl cis-trans isomerase 1 [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|O81864|FK171_ARATH | 3.00E-62 | Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VKD1|A0A072VKD1_MEDTR | 4.00E-87 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00798 | 45963 | 51221 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000798s00031095.1 | PF00254.23 | FKBP_C | 105 | 191 | 1.10E-19 |
| Glyur000798s00031095.1 | PF00254.23 | FKBP_C | 191 | 231 | 8.30E-08 |
| Glyur000798s00031095.2 | PF00254.23 | FKBP_C | 105 | 193 | 3.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.911 |
| SRR1783600 | control | 3.004 |
| SRR1783602 | moderate drought stress | 3.980 |
| SRR1811619 | moderate drought stress | 3.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.950 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.755 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.031 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.021 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.640 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.255 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.106 |
| SRR2868004 | Drought Stress (root) | 0.541 |
| SRR2967015 | Control (root) | 0.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.843 |
| SRR9715740 | Leaf | 19.604 |
| SRR9715741 | Leaf | 10.712 |
| SRR9715739 | Root | 0.155 |
| SRR9715742 | Root | 0.963 |
| SRR9715743 | Root | 0.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.212 |
| SRR8749028 | MeJA induced 9h | 0.649 |
| SRR8749029 | MeJA induced 9h | 0.028 |
| SRR8749030 | Uninduced | 0.133 |
| SRR8749031 | Uninduced | 0.556 |
| SRR8749032 | Uninduced | 0.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.973 |
| SRR8400027 | Control - Root | 1.177 |