Gene detail

Gene detail information of Glyur000797s00025507.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G13000.1	glucan synthase-like 12
NR	XP_004491686.1	PREDICTED: callose synthase 3-like [Cicer arietinum]
Swissprot	tr\|Q9LXT9\|CALS3_ARATH	Callose synthase 3
trEMBL	tr\|G7KWP5\|G7KWP5_MEDTR	Glucan synthase-like protein {ECO:0000313\|EMBL:AES77225.2}

Sequence

Transcript Sequence

>Glyur000797s00025507.1
ATGGCACGAATGCCATTTTTTCTTCGTGAGGGTAAGCCTGAAAATCAAAATCATGCCATAATTTTCACACGTGGAGAAGGCTTGCAAACAATAGATATGAACCAGGATAACTATATGGAAGAAGCTTTGAAAATGAGAAATTTGTTGCAAGAATTTCTCAAGAAGCATGACGGTGTGAGGTTCCCAAGTATTCTTGGACTTAGGGAGCACATATTTACTGGAAGTGTTTCTTCCCTTGCATGGTTCATGTCAAATCAGGAGACAAGTTTCGTGACAATTGGTCAGAGATTGTTGGCTAATCCTCTAAAGGTTCGTTTCCACTATGGTCATCCAGATGTCTTTGATAGGCTTTTTCACCTGACAAGAGGGGGTGTCAGTAAAGCCTCCAAGGTTATCAATCTGAGTGAAGATATTTTTGCTGGCTTCAACTCTACACTCCGGGAAGGAAATGTTACTCATCACGAGTACATACAAGTTGGGAAGGGAAGGGATGTGGGTCTCAACCAAATTTCAATGTTTGAAGCAAAGATAGCTAATGGCAATGGAGAGCAGACACTAAGTCGAGATATAACTGTTCTCACTGTATATGTATTCCTCTATGGTCGCCTCTATCTTGTTCTCAGTGGGCTTGAAGAAGGTTTGAGTACACAAAAAGCCATTCGTGACAATAAGCCTCTTCAAGTGGCTCTTGCTTCTCAGTCATTTGTTCAAATTGGGTTTTTAATGGCCTTGCCCATGTTGATGGAAATTGGCTTGGAAAGGGGCTTCCGAACTGCACTTAGTGAATTTATATTAATGCAGTTGCAGTTGGCCCCGGTATTCTTCACGTTTTCACTAGGGACCAAGACTCACTATTTTGGAAGGACATTGCTTCATGGAGGTGCAAAATATAGACCCACAGGTCGAGGGTTTGTGGTTTTCCATGCTAAGTTTGCTGACAATTATAGACTTTACTCCCGTAGCCACTTTGTGAAGGGTATTGAGCTCATGATATTGCTTGTTGTATATCAAATTTTTGGTCATACGTACAGAAGTGCTCTGGCATATGTATTGATTACCATATCAATGTGGTTTATGGTGGGCACCTGGCTGTTTGCTCCATTCTTGTTCAATCCCTCTGGGTTTGAATGGCAAAAAATTGTTGATGATTGGACTGATTGGAATAAATGGATTAGTAATCGAGGAGGAATAGGTGTACCACCTGAAAAAAGTTGGGAATCTTGGTGGGAAGAGGAACAAGATCATCTCCAACATTCAGGATTACGGGGAATCATAGTGGAGATATTGTTATCACTGCGATTTTTTATCTACCAGTATGGTCTTGTATATCACTTGAATATTACGAAGAAGGGCAATAAAAGTTTTCTGGTCTATGGCATTTCGTGGTTGGTGATCTTTGTAATACTGTTTGTGATGAAGACTGTATCTGTTGGGAGACGTAAATTCAGTGCAAATTTTCAGCTTGTCTTTCGACTAATAAAGGGGTTGATATTCTTAACTTTTGTCTCGATTCTTGTCACTTTGATTGCCCTTCCACATATGACAGTGCAGGACATTGTTGTCTGCATCCTTGCCTTCATGCCAACTGGTTGGGGAATGCTACAGAGTAGTTCCAACGTCCTCCCTCGAAGCCACCATGAGATGCGGCCTCTCTCTCGTTCTCCTCCCTATGCGATCGCGGTGGCCGCCTCCCTTCTCGCCATTGTGCACAGCCTCCCTTGGCCGCGCGGAGCTCCTCCGTTGGCCGTGCGGGGATGGGGGGCACGGTGCATCAGTGGAGGGGAAGGAGAACGAAAAAAATGGGTTAAAATTGCTCAAGCATTAAAACCTGTAGTACGACGTGCTGGATTTTGGGGATCAGTAAAGACTCTTGCTCGTGGTTATGAGATTGTCATGGGCTTGCTTTTGTTCACTCCTAATTTCAAACCCGTATGCTGTTCAACCAAGCGTTCAGCAGAGGCCAAAGGAAGGAGCGCTCTTCTCGCAACAAGGAATAGTTTGTCTGCAAAAAGGCTTAATTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00797	107847	112341	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006075 (1->3)-beta-D-glucan biosynthetic process

cellular_component

GO:0000148 1,3-beta-D-glucan synthase complex

GO:0016020 membrane

molecular_function
GO:0003843 1,3-beta-D-glucan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000797s00025507.1	PF02364.10	Glucan_synthase	8	193	4.20E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.886
SRR1783600	control	20.998
SRR1783602	moderate drought stress	11.770
SRR1811619	moderate drought stress	11.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.373
DRR006520	Root Summer glycyrrhizin high producing strain	24.108
DRR006521	Root Winter glycyrrhizin high producing strain	2.311
DRR006522	Root Winter glycyrrhizin high producing strain	2.085
DRR006523	Root Summer glycyrrhizin low producing strain	14.856
DRR006524	Root Summer glycyrrhizin low producing strain	14.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.914
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.705
SRR2868004	Drought Stress (root)	30.461
SRR2967015	Control (root)	33.725

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.719
SRR9715740	Leaf	5.038
SRR9715741	Leaf	4.798
SRR9715739	Root	5.582
SRR9715742	Root	18.931
SRR9715743	Root	18.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.600
SRR8749028	MeJA induced 9h	27.527
SRR8749029	MeJA induced 9h	31.839
SRR8749030	Uninduced	4.041
SRR8749031	Uninduced	3.318
SRR8749032	Uninduced	8.608

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.956
SRR8400027	Control - Root	50.418