Gene detail information of Glyur000797s00025501 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43120.1 | 2.00E-106 | RmlC-like cupins superfamily protein |
| NR | XP_004506397.1 | 4.15E-162 | PREDICTED: pirin-like protein At2g43120-like [Cicer arietinum] |
| COG | YP_006860828.1 | 8.00E-71 | pirin domain-containing protein [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|Q9SEE4|PIRL_SOLLC | 2.00E-133 | Pirin-like protein |
| trEMBL | tr|I1N5F6|I1N5F6_SOYBN | 6.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00797 | 76615 | 79095 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000797s00025501.1 | PF02678.11 | Pirin | 60 | 153 | 1.60E-34 |
| Glyur000797s00025501.1 | PF05726.8 | Pirin_C | 196 | 285 | 2.00E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.807 |
| SRR1783600 | control | 5.944 |
| SRR1783602 | moderate drought stress | 6.603 |
| SRR1811619 | moderate drought stress | 6.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.968 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.182 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.183 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.175 |
| SRR2868004 | Drought Stress (root) | 209.545 |
| SRR2967015 | Control (root) | 52.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.716 |
| SRR9715740 | Leaf | 63.404 |
| SRR9715741 | Leaf | 181.530 |
| SRR9715739 | Root | 15.038 |
| SRR9715742 | Root | 56.105 |
| SRR9715743 | Root | 51.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.523 |
| SRR8749028 | MeJA induced 9h | 96.329 |
| SRR8749029 | MeJA induced 9h | 79.086 |
| SRR8749030 | Uninduced | 174.167 |
| SRR8749031 | Uninduced | 71.057 |
| SRR8749032 | Uninduced | 45.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.823 |
| SRR8400027 | Control - Root | 37.564 |