Gene detail

Gene detail information of Glyur000797s00025498

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43070.1	1.00E-162	SIGNAL PEPTIDE PEPTIDASE-LIKE 3
NR	XP_007139105.1	0	hypothetical protein PHAVU_008G001700g [Phaseolus vulgaris]
Swissprot	tr\|Q53P98\|SIPL2_ORYSJ	0	Signal peptide peptidase-like 2 (Precursor)
trEMBL	tr\|V7AZT9\|V7AZT9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11099.1}

Sequence

Transcript Sequence

>Glyur000797s00025498.1
CAAATAAATAGGAGAATAGAACGGAACGGGGAAATCGAAAAATTGTAATTGTAATTGCAGTTAGGTTAGTTGAGAGGAGGCAGTGAAAGTGAAGCGCAGTAAGTGGTAAGCTGTTGATTGTTTGTTCCTTCCATCTCGTGAGTGAGTCTTGACTCGTGTCATGAGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGATAGCTTTATATATACACGTAAAGCAAACAGTATCATTCAATTCAGTCATCACCTGATCAATTCATCAGGTTGCATCACAAGAATGGCGTCGTCTCCTTCTTCTCGCAGCCTGCGAGTGTTTGTGTCGGTGTTGTTATTGTTGGTGTTGTTGATTGTGACTGCAGCGGGCGCCGACGATGTGAAGCGCGATGACGAGAGGGCTCCCAAGTCCGATTCCTGCAATAACCCCTTCCAATTGGCTAAGGTGAAGAGCTGGGTCGATGACGAGGAAGACAGTGTTTATCACGGTATGACTGCAAGATTTGGTTCTTTACTTCCTGAGAAGGCTGAAAATAGTGTCAGAACTCCTGCCATTTTTGCTAATCCTGTTGACTGCTGTTCCCCTTCAACTTCCAAGTTGTCTGGATCGGTCGCTCTCTGTGTGCGTGGGGGTTGTGACTTTGAAGCTAAAGCTGCATTTGCACAGTCTGGAGGTGCTACTGGCATGTTGGTNATTAATGACGAAGAAGATCTCTTTGAGATGGTTTGCTCTAATAGCACNGAGGCAAACATTTCAATTCCAGTTGTGTTGGTAACAAAATCAGCAGGAGAAGCTCTCAACAACTCTTTGACATCTGGGAGGAGAGTGGAAATCTTGTTATATGCTCCACCTCGCCCACTTGTAGACTTCTCAGTTGCATTTTTGTGGTTGATCTCTGTTGGAACAATTGTATGCGCTTCACTATGGTCGGATCTAACTGCTTCTAAGAAGTCTGATGATCGCTATGATGAATTGTATCCCAAGGAATCTTCAAATGCTGAAGCAGCAAAAGGTGATTCTAATAAGGAAATTGTTAACATCAGTTCAAAGGCTGCTATCATATTTGTCATAATAGCATCTACGTTTCTTGTTCTATTGTTCTTCTTCATGTCATCTTGGTTTATCTGGGTGCTGATTGTACTTTTCTGCATCGGTGGTATTGAGGGGATGCACAATTGTATCACAAGCCTCACTTTTAGAAAATGCCAAAATTGTGGTCAAAAGACAGTGAGCTTACCTCTGTTTGGGGAGACTTATATTTTCTCGCTGGTAGTGTTTTTATTCTGTGTGGCATTTGCGGTTTTTTGGGCTGCCACTCGACGGGAATCTTATTCATGGATTGGCCAAGATATTCTTGGAATCTGTTTGATGATAACCGTCTTGCAGTTAGCTCGATTACCCAATATTAAGGTTGCAACTGTACTGCTCAGTTGTGCCTTTGTCTATGACATTTTTTGGGTGTTCATATCTCCGGTGATATTCCATGAAAGTGTCATGATTGCAGTTGCTCGAGGTGACAAGGCTGGTGGGGAAGCAATTCCTATGCTTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGTGGTTATGACATGATTGGGTTTGGAGATATTCTCCTTCCTGGTTTGCTTATTTCCTTTGCTCATAGATTTGACAAAGATAATAAGAAGGGAGCATCAAATGGATATTTTCTTTGGTTGGTAATTGGCTATGGCATTGGCCTCATTCTCACATATTTGGGGCTATATCTGATGGACGGAAATGGACAACCTGCACTCCTCTACCTTGTTCCATGTACATTAGGTGTCATTATTATTTTGGGATGGATAAGAGGGGAGCTGAAGAGCCTTTGGAATTATGGCGCAGACACCTCGTCGTCCACAGAGCCTTCTGAAGTTTAAATGATTAACTGTTTACACTATAGGTCCCTTGAGAATTGAAGAAATTACACTGGAACTTGGGAAATGATCGCAGCTCAATGGGACGAAAACAATGCAGTGGTTCGGATAGACTCCAGGTGTACAGGCTACTCTTCTGGGGCCTCCATAACTATCTTTTGTGTTTATGATGATTTATGATGATTAATCAGCAGTATTCTTTGTGCTCAGCTCCGTCATAGTAGTTTTCGTGTAAATGGAAAAGGAAAAACAAAAGGCAATTCATCGTTTTTCTTGTTCTATTGTCTGTCAATTTTCTCGTCAAACTAAAACCTGGCAATTGTTGATGCATGCATTTACGAGCCTAGATGGGATACATACAATACTCGCTGAAAGAGTACAATATATTAACTTTCTAAACCAAAACCAAATGCTTTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00797	55598	68278	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000797s00025498.1	PF02225.17	PA	97	174	4.30E-15
Glyur000797s00025498.1	PF04258.8	Peptidase_A22B	246	524	3.80E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.981
SRR1783600	control	17.863
SRR1783602	moderate drought stress	13.189
SRR1811619	moderate drought stress	13.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.847
DRR006520	Root Summer glycyrrhizin high producing strain	33.256
DRR006521	Root Winter glycyrrhizin high producing strain	58.961
DRR006522	Root Winter glycyrrhizin high producing strain	56.932
DRR006523	Root Summer glycyrrhizin low producing strain	32.944
DRR006524	Root Summer glycyrrhizin low producing strain	33.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.704
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	95.368
SRR2868004	Drought Stress (root)	103.501
SRR2967015	Control (root)	94.009

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.197
SRR9715740	Leaf	55.936
SRR9715741	Leaf	67.852
SRR9715739	Root	30.885
SRR9715742	Root	49.862
SRR9715743	Root	48.925

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.750
SRR8749028	MeJA induced 9h	34.190
SRR8749029	MeJA induced 9h	23.733
SRR8749030	Uninduced	22.338
SRR8749031	Uninduced	15.312
SRR8749032	Uninduced	17.074

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.439
SRR8400027	Control - Root	86.156