Gene detail information of Glyur000797s00025497 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50760.1 | 5.00E-18 | SAUR-like auxin-responsive protein family |
| NR | AFK48563.1 | 2.30E-61 | unknown [Medicago truncatula] |
| Swissprot | tr|P32295|ARG7_VIGRR | 3.00E-13 | Indole-3-acetic acid-induced protein ARG7 |
| trEMBL | tr|I3T7S1|I3T7S1_MEDTR | 9.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:AFK48563.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00797 | 53480 | 54055 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000797s00025497.1 | PF02519.9 | Auxin_inducible | 47 | 138 | 4.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.996 |
| SRR1783600 | control | 10.229 |
| SRR1783602 | moderate drought stress | 47.033 |
| SRR1811619 | moderate drought stress | 46.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.187 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.387 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.378 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.993 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.963 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.156 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 153.789 |
| SRR2868004 | Drought Stress (root) | 157.096 |
| SRR2967015 | Control (root) | 177.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 2.414 |
| SRR9715742 | Root | 2.491 |
| SRR9715743 | Root | 2.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 414.281 |
| SRR8749028 | MeJA induced 9h | 984.043 |
| SRR8749029 | MeJA induced 9h | 368.333 |
| SRR8749030 | Uninduced | 535.581 |
| SRR8749031 | Uninduced | 449.293 |
| SRR8749032 | Uninduced | 189.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 111.455 |
| SRR8400027 | Control - Root | 55.607 |