Gene detail information of Glyur000795s00031103 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17010.1 | 3.00E-30 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | KHN29925.1 | 2.25E-63 | Protein SRG1-like protein [Glycine soja] |
| COG | YP_001264730.1 | 5.00E-06 | 2OG-Fe(II) oxygenase [Sphingomonas wittichii RW1] |
| Swissprot | tr|Q39224|SRG1_ARATH | 1.00E-37 | Protein SRG1 |
| trEMBL | tr|C6THA1|C6THA1_SOYBN | 2.00E-63 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU21203.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00795 | 5956 | 7772 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000795s00031103.1 | PF14226.1 | DIOX_N | 50 | 136 | 1.80E-13 |
| Glyur000795s00031103.1 | PF03171.15 | 2OG-FeII_Oxy | 124 | 163 | 4.80E-07 |
| Glyur000795s00031103.2 | PF14226.1 | DIOX_N | 50 | 81 | 3.90E-07 |
| Glyur000795s00031103.2 | PF14226.1 | DIOX_N | 84 | 130 | 9.20E-07 |
| Glyur000795s00031103.2 | PF03171.15 | 2OG-FeII_Oxy | 118 | 157 | 4.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.848 |
| SRR1783600 | control | 17.887 |
| SRR1783602 | moderate drought stress | 20.653 |
| SRR1811619 | moderate drought stress | 20.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.308 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.437 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.351 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.233 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.729 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.413 |
| SRR2868004 | Drought Stress (root) | 5.131 |
| SRR2967015 | Control (root) | 7.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.145 |
| SRR9715740 | Leaf | 75.568 |
| SRR9715741 | Leaf | 38.609 |
| SRR9715739 | Root | 2.040 |
| SRR9715742 | Root | 5.184 |
| SRR9715743 | Root | 5.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.562 |
| SRR8749028 | MeJA induced 9h | 1.922 |
| SRR8749029 | MeJA induced 9h | 1.270 |
| SRR8749030 | Uninduced | 1.916 |
| SRR8749031 | Uninduced | 0.424 |
| SRR8749032 | Uninduced | 1.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.699 |
| SRR8400027 | Control - Root | 12.971 |