Gene detail information of Glyur000794s00035443.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57300.3 | 6.00E-12 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_003604349.1 | 1.39E-22 | Ubiquinone biosynthesis methyltransferase COQ5 [Medicago truncatula] |
| Swissprot | tr|Q5JNC0|COQ5_ORYSJ | 2.00E-15 | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (Precursor) |
| trEMBL | tr|B7FL93|B7FL93_MEDTR | 5.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:AFK35684.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00794 | 30 | 830 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06127 | COQ5 | EC:2.1.1.201 | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000794s00035443.1 | PF01209.13 | Ubie_methyltran | 6 | 46 | 0.00011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.252 |
| SRR1783600 | control | 14.848 |
| SRR1783602 | moderate drought stress | 11.355 |
| SRR1811619 | moderate drought stress | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.297 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.348 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.880 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.695 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.938 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.671 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.369 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |