Gene detail information of Glyur000793s00026511 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03560.1 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | KEH19381.1 | 0 | PPR containing plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9LR67|PPR9_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g03560, mitochondrial (Precursor) |
| trEMBL | tr|A0A072TQC8|A0A072TQC8_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH19381.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00793 | 104012 | 106012 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000793s00026511.1 | PF01535.15 | PPR | 202 | 229 | 0.0079 |
| Glyur000793s00026511.1 | PF01535.15 | PPR | 235 | 261 | 0.00048 |
| Glyur000793s00026511.1 | PF13041.1 | PPR_2 | 266 | 314 | 2.50E-18 |
| Glyur000793s00026511.1 | PF01535.15 | PPR | 341 | 369 | 0.00026 |
| Glyur000793s00026511.1 | PF13041.1 | PPR_2 | 375 | 420 | 6.50E-13 |
| Glyur000793s00026511.1 | PF13041.1 | PPR_2 | 442 | 490 | 1.20E-16 |
| Glyur000793s00026511.1 | PF01535.15 | PPR | 514 | 544 | 0.0011 |
| Glyur000793s00026511.1 | PF01535.15 | PPR | 585 | 604 | 0.21 |
| Glyur000793s00026511.1 | PF01535.15 | PPR | 621 | 641 | 0.97 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.991 |
| SRR1783600 | control | 9.008 |
| SRR1783602 | moderate drought stress | 13.752 |
| SRR1811619 | moderate drought stress | 13.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.215 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.936 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.675 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.264 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.349 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.416 |
| SRR2868004 | Drought Stress (root) | 6.735 |
| SRR2967015 | Control (root) | 7.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.981 |
| SRR9715740 | Leaf | 1.537 |
| SRR9715741 | Leaf | 0.927 |
| SRR9715739 | Root | 6.376 |
| SRR9715742 | Root | 6.066 |
| SRR9715743 | Root | 6.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.105 |
| SRR8749028 | MeJA induced 9h | 2.216 |
| SRR8749029 | MeJA induced 9h | 1.335 |
| SRR8749030 | Uninduced | 0.999 |
| SRR8749031 | Uninduced | 0.048 |
| SRR8749032 | Uninduced | 0.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.603 |
| SRR8400027 | Control - Root | 8.447 |