Gene detail

Gene detail information of Glyur000793s00026509

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78630.1	8.00E-81	Ribosomal protein L13 family protein
NR	AFK35788.1	4.38E-144	unknown [Lotus japonicus]
COG	YP_007142669.1	2.00E-63	50S ribosomal protein L13 [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9SYL9\|RK13_ARATH	1.00E-100	50S ribosomal protein L13, chloroplastic (Precursor)
trEMBL	tr\|I3S696\|I3S696_LOTJA	2.00E-144	Uncharacterized protein {ECO:0000313\|EMBL:AFK35788.1}

Sequence

Transcript Sequence

>Glyur000793s00026509.1
CTACATTATCCAAGTCGAAGGGATATNCAGAAGGGAGAGATAGATAGATAGGACGCAGCAGAGCGAGTGAGAAAGAGAAAGAGCGCAGCGCAGCAACAATGGCCTTGCTGTGTGGTTCAGCGTCGGTAACGTTCCCTTCAACTTCATTCCCTCCTCACAGTCACAGGACTGCAACTACTAAATCCTCCTTTGTTGGCTACCAATTGCCACTGCCGAAGCTTTCATTNTCACCATCTTCTATTCGTACCCATTTCCCTGCACCTTTCCGTGTCCGTTCTCAGCAGGACACTTCCTTGGTCCAAGAGGATCCACGCTTCATCTGCGTTGAACCTGAGCCCCGTTTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGAGGATCATGTCAATACAGAGAAAACATGGTACATTGTNGATGCAACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCTATTCACNTCCGAGGGAAAAACTTGATGACCTATACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTAAATGCAGAGAAGGTTGCTGTAACTGGGAAAAAGAGGACCCAAAANATTTATAGGAGGCACTCTGGACGACCTGGTGGTATGACAGAGGAGACATTTTCCCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACATGCCGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAGACTATTCACTCACCTGAAGGTTTATAGTGGCCCGGATCATCCACATGCGGCGCAGAAGCCCGTCGAGTTGCCAATAAGGGATAAGAGAATACAGTTGAAGAAATAGGTCATAGGTGTTTGTTTGCATAGAGCATGGAATGAAATATGAGTATATGACAAGCACANATCTTTAGCTGCTACTTTGCTGATGGTTCTTTTGATGTTTATATTGTCTGTAGAGGTATCTGATTATATTATTATTACTTGTTGTTTTATCCAAGGCCCTTTGTCAAATCTTTATGATAACTTTTTTGTACCTTTGAATCTTAGACATGTAATTTATTTTTTTCTAACATACTTTTGAGTTTATTAGTAACGTTTTCTTTTTAAGGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00793	87584	90951	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component
GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000793s00026509.1	PF00572.13	Ribosomal_L13	106	232	3.40E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.138
SRR1783600	control	48.297
SRR1783602	moderate drought stress	60.750
SRR1811619	moderate drought stress	60.183

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.177
DRR006520	Root Summer glycyrrhizin high producing strain	30.361
DRR006521	Root Winter glycyrrhizin high producing strain	16.994
DRR006522	Root Winter glycyrrhizin high producing strain	16.921
DRR006523	Root Summer glycyrrhizin low producing strain	54.400
DRR006524	Root Summer glycyrrhizin low producing strain	53.795
DRR006525	Leaf Summer glycyrrhizin high producing strain	243.353
DRR006526	Leaf Summer glycyrrhizin high producing strain	242.570

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.248
SRR2868004	Drought Stress (root)	21.836
SRR2967015	Control (root)	25.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	119.966
SRR9715740	Leaf	158.012
SRR9715741	Leaf	76.937
SRR9715739	Root	23.577
SRR9715742	Root	16.708
SRR9715743	Root	19.943

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.361
SRR8749028	MeJA induced 9h	12.731
SRR8749029	MeJA induced 9h	13.683
SRR8749030	Uninduced	4.927
SRR8749031	Uninduced	2.462
SRR8749032	Uninduced	4.864

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.320
SRR8400027	Control - Root	50.801