Gene detail

Gene detail information of Glyur000793s00026505

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78710.1	9.00E-103	TRICHOME BIREFRINGENCE-LIKE 42
NR	AFK42120.1	0	unknown [Lotus japonicus]
Swissprot	tr\|Q9ZV89\|TBL42_ARATH	9.00E-126	Protein trichome birefringence-like 42
trEMBL	tr\|I3SPC8\|I3SPC8_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK42120.1}

Sequence

Transcript Sequence

>Glyur000793s00026505.1
AAAAAACGTTTACGACAGTTTCAAATGGCATTCTTTTTCTGGTTNCATCTTCTGCCACAGGCCTTTTCTGTTGTTCTATGGACAGTGGCACCTCCACTACTACTGTACCAAGTGAAGGGCAGCAATGCCTTCTTCTTCCATAGGAACCAATTATTAAACCAACAAAAAGTGTGTGATTTTTCTCAAGGGAGATGGGTTGTTGATGACCCTTACTACCCTCTCTATGATGCCTCAAGTGATTGCCCTTTCATAGTGCAGGGATTTGATTGCCTCAGGAATGGTAGACCTGATCAGGAATACCTCAAGTATAGATGGAAGCCTTCTGCTTGTGACCTTCCAAGGTTTGATGGTGTGAAATTCTTGGAGAGATACAGAGGGAAGGACATAATGTTTGTGGGGGACTCCATAAGCAACAATATGTGGCAGTCACTCACTTGTTTGCTTCACAATGCAGTGCCAAAATCAAATTACACCTTAACAACTGTAACAAAGCATCTTTCTGTGTTCTCATTTCCGGAATACCAAGCTTCAATAATGTGGTTCAAAAATGGGTACCTAGTGGATGTGGTTCGTGATAATANAAAGGGCAGGATTGTAAAACTGGACTCCATTAGATCTGGGAACATGTGGAGAGGGGATGTTTTGATTTTCAATACCTACCATTGGTGGACTCACACAGGAAAATCTCCAATGTACTATCAAATGGGCAATGAGATAATCAAAGACATGGATCCCATGGAAGCTTACAAGATTGGGCTAACCACTTGGTCTCAATGGATTGATTCTAACATTGATCCCTCAAAGACTAGAGTTTTGTTCCAAGGAATTGCTGCTTCCCATTCCGGGGGAAAGGGCTGTCTCAGCCAAACTCACCCAGAGGAAGGACCAAAGCCACCTTACCCTGGTGTAGACATTGTGAAGAGCGTTTTGAGTAACATGAAAGTTCCNGTTTATTTGCTTGACATTACTTTGCTCACACAGCTGAGGATAGATGGCCATCCTTCTATATACACTGGCCAAGGCACTTCTTATGAAGACTGCAGTCACTGGTGTCTAGCTGGTGTTCCTGATACTTGGAATGAAATCTTATACTCTGCTTTGCTTGGAAATTAATATTATCATCCTTTGTAAACTCTAGTTTTTGATAGTTTTTTTGCCCCCATTTGAGGATACAAGACTCAAATGAATTTGGATTGTAGACATAATAAAATGTGTTAGTGTTACTTTGTCTTTTAACTGAAGCAGCTTGCCTATNTTGGGGTAGTAAAGATAAAGAATCAAAGCATCATGTGAAAATGAAAGAATGATCCATCATGATGATATTACCAATAATCACCACAGGAACATGATCCANCTTTAAAATGGTGGAATCTATTAATATCTCTGACAATAATTTCCCTTGAAACAATTTTACTTACGAACTTGAAAAAGGTGTGGCAGTCAACACAAACTCGCAAATTCTTCTTTACCCTTATTGGGGATCCAGGTGGCGTAGCAATTAATCCAAAGGCTACAGCAAGTTTCTCACTGTGATGAGACAAGAGATGTTCCTTTTCACTCTGGTTCACATTATGTATNTCAATCTCTATGATGGGACTATATCCAGCTTTACTTAGAAGGTCACTCAACTGATCCAATTTAGCATATATCTCATCNCTTCTAGAATGACTTCTATCTCCAACAATGAAGGTGTGTACCTTGTCTTTGACCTCAATCCAACTCATTCCAGGCTCCTTCTTCACCTTGCTGTCTTTCATAAGCTTTCTAACCTTGGCAACATTTTCCCACATCCCTGCTGATGCATAGATGTTTGCAAGGAGAACATGAGTACCAGATTTGTCTGGCTCAAGGGTGAAAAGCATCTCTGCAGCTTTCTGACCAAGTTCCACATTTTTATGGATTCTTGCAGCTCCAAGAAGTGCCCCCCAAACTGAGCCATCAGCCTCAAATGGAATGGAATTCACAAGCTCCATTGCTTCATTTAATTTTCCTGACCGTCCAAGGAGATCAATCATGCAAGCATAATGCTCTTGTGTGGGTTTGATCCCATACATTTCCTCCATTGTTTCAAAGTATTGTTTTCCCTCATTCACCAAACCGGCATGATTACATGCACAGAGAACACTGACTAATGTAATATGGTTGGGGGACACGTCATGTTTAAGCATTTCATTGAACAAGTGAAGAGCCTCTTTACCATGGCCATGCTGAGCCAACCCTCCAATAATTGCAGACCATGAGACTANTCCTCTCTTAGGTATCTCAGAAAAGGCACGATCCGCATCCTCTATGCTACCGCATTTCGCATACATATTAACCAGAGAATTGCTGGCAAAAATATCAGACATGAATCCAAACTTGATGGTGTGGACATGTAATTGTTTCCCTTGCTCATATGCAGACAAATTTGCACAAGCATTCAAGAGAGAACTGCAAACAAATGGATCTGGCTTGATGTCTGCATGTTGCATTTGCAAATATAGCTTTAAAGCCTCCTCTCCATCCCCATATTGAGAATATGCTGTTATCATGGATGTGTAGGCCACCAAATCTTCCCAAGTGCGCTCTTCAAATATTTTTGAAGCTTCATCTATATGGCTACATTTTCCATACGTGTCAAGAAGACTGTTTATAACATAGAAGTCCGAATAAATTCCAGATTTGACGGAAAGTGTATGAATTTGCTTGCACGCCTTAATTGCATGCAAGCTGGCCACGGATTTGAGAACTGTTGACAAAGTAGTCTGGTTGAAATCCATATTTTCATGGTGCATCTCAGAAAAAAGTGAGACAGCTTGAAAGTCATCACCACACTGTGAGTAACCGGAGATCAAAGCATTCCAAGCAATAAGATCCTTCTTTGGCATCAAATCGTAGGCTCTTCTAGCATCATCCATCATTTCACACTTGGAATACATATCTATTAGTCCAACAGCCACAAACAAATCTGNATCTGAATCAATCTTTATCAAACAAGAATGTAGCTGTCTACCCAACTCCTTGAACCCCATTGCAGCACAGGCCTTCAAAGCACTTGATAAAGTAAACACATTGGGACAAGTTCCTGAGCTTTTCACCTCATTCAACAGTATCAAAGCCAAATCATTACACTCATGAAGAACACAACCGGCAATAACTGCATTCCAGGAAACAATATCAGGGTGTTTAATTTCTCGAAAAACAGAAACTGCATCCTCTATACCCCCAGCTTTTGCATACATGTCAACTAAGGCATTTGCAGAAAACTGATCCAAACCATGACCTAGCTTCAGCAAAAGCCCATGAACCGTCCTTGCAAGACCACCATCCCGCAATCCCGCGCAGGCATTCAATATAATGGAAAGGCTGAACTCATTAGGCCTCACTTCACCATCAACCATTCCCTTAAACAAGTCCACAGCTTCAGCAAAGAGATCACCCTGCACATAACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00793	80343	85092	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000793s00026505.1	PF14416.1	PMR5N	56	111	8.60E-21
Glyur000793s00026505.1	PF13839.1	PC-Esterase	112	367	1.30E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.988
SRR1783600	control	0.995
SRR1783602	moderate drought stress	0.904
SRR1811619	moderate drought stress	0.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.210
DRR006520	Root Summer glycyrrhizin high producing strain	1.225
DRR006521	Root Winter glycyrrhizin high producing strain	0.650
DRR006522	Root Winter glycyrrhizin high producing strain	0.665
DRR006523	Root Summer glycyrrhizin low producing strain	1.647
DRR006524	Root Summer glycyrrhizin low producing strain	1.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.712
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.624
SRR2868004	Drought Stress (root)	1.444
SRR2967015	Control (root)	1.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.714
SRR9715740	Leaf	0.848
SRR9715741	Leaf	0.605
SRR9715739	Root	0.522
SRR9715742	Root	0.589
SRR9715743	Root	0.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.237
SRR8749028	MeJA induced 9h	3.893
SRR8749029	MeJA induced 9h	2.305
SRR8749030	Uninduced	8.729
SRR8749031	Uninduced	6.469
SRR8749032	Uninduced	6.516

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.293
SRR8400027	Control - Root	1.587