Gene detail

Gene detail information of Glyur000793s00026496.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02065.1	1.00E-57	squamosa promoter binding protein-like 8
NR	XP_003530168.1	1.68E-143	PREDICTED: squamosa promoter-binding-like protein 8-like [Glycine max]
Swissprot	tr\|Q8GXL3\|SPL8_ARATH	1.00E-76	Squamosa promoter-binding-like protein 8
trEMBL	tr\|I1JMW0\|I1JMW0_SOYBN	2.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G27180.2}

Sequence

Transcript Sequence

>Glyur000793s00026496.1
CTCTTGTTTGCAAGAGAGAGAGAGAAAGAGAGAGTCATGTTGGACTACGAATGGGGGAACCCCTCAACGATAATGCTCACCGGAAATGAAGACGGCGCCGCCGCTGANTCCGATCAAGCCCACCGTCAAATCTTCGACCACTACGCCTCCCACTCCATGCTACCCGACCACTTCCTACACGGGCCTGGGCCCACACCCACCACAAACACAAACACCATCACTGATTTCACTCACCACAACCACCACCACCACCACCACCAGAACCACCNCTTTAGCCCACAACAAGCCCANCACGCATTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTTCCCTCCGCCCCAGCCACCACCGCCTCCTCCTCCTTCCATGCTCTCCCTCGACCCACTCCCCCATCACGTGAACGCACCCACCTGTGGACCTGGGCCCGGGCATGGGCTCCTCCTCGTGCCGAAGTCTGAGGACATGGGTCGGCCCATGGACTTCGTGGGCTCGCGAATTGGGCTCAACCTTGGCGGCCGCACTTACTTCTCTTCCTCTGAGGACNACTTCGTGAGCCGGCTCTACCGCCGGTCCAGACAGGCCGAACCGGGCTCGACCGCGTCGTCGAACTCGCCGAGGTGTCAGGCCGAAGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAGGCCGCCACGGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTCGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCCGATCACAATCGTCGTAGAAGAAAAACTCAACAGCCAACTCAAGAAATTCAGAAATCTCAGACCCCTTTGGAAAATGCTGCTTCAAGTACGATCCCCGCCGGACTCGGGAACCCAATCTTCATCGTCGGTGACGGTGGCGGTTTCGCCGCCGGATTATTTCCGGCAAAGGCCGTACCAAAGCACAAGCCCTTCAACAACTTCAAGCTCACTGTTTTTCTCAAGCGGGTAGAGTGCAATATGTAGCTAGCTANCTACTAGCTAATAGAGCAGTTTTAATTTGCATGGCTAATATATTTTCCAAGAAGAAATTAATGGAGGAGCGTCCATCCGCAGCAGCAATAATTTGCATGGCTAAATATATATTTCCATCTACTTGTAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00793	29621	31718	-

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000793s00026496.1	PF03110.9	SBP	195	272	3.50E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.346
SRR1783600	control	31.441
SRR1783602	moderate drought stress	40.475
SRR1811619	moderate drought stress	40.795

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.363
DRR006520	Root Summer glycyrrhizin high producing strain	4.140
DRR006521	Root Winter glycyrrhizin high producing strain	0.184
DRR006522	Root Winter glycyrrhizin high producing strain	0.180
DRR006523	Root Summer glycyrrhizin low producing strain	3.378
DRR006524	Root Summer glycyrrhizin low producing strain	3.534
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.877
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.683

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.082
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.079

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.967
SRR9715740	Leaf	36.787
SRR9715741	Leaf	24.976
SRR9715739	Root	36.823
SRR9715742	Root	38.452
SRR9715743	Root	37.043

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.053
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.051
SRR8749030	Uninduced	0.022
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.701
SRR8400027	Control - Root	6.294