Gene detail

Gene detail information of Glyur000790s00021812

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14790.1	RNA-dependent RNA polymerase 1
NR	XP_004498236.1	PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LQV2\|RDR1_ARATH	RNA-dependent RNA polymerase 1
trEMBL	tr\|A0A072VR80\|A0A072VR80_MEDTR	RNA-directed RNA polymerase {ECO:0000313\|EMBL:KEH40645.1}

Sequence

Transcript Sequence

>Glyur000790s00021812.1
ATGGTTATTCCCACTTNAGCAAATATATATGAAGATCCTTTGTTGAACTATTTTAAAGATACACCTGATGAGCAATGGATTCGAGCAACAGATTTCACTCGTTGCAGTTGTATTGGGCAGTCTTCTGCTTTGTGTCTGGAGATTCCCGATGACCAANATTTTCCAAATTTCAGGGAAAACTTTGNTTATTATGGTGAAAGTGAGAAGCAGTACGCTTTGGAGAGTGGATATCCTTTTTCTCGCAATCTGGATCTTGTCCCCATTGTTGCTCCTCCTCAANGCATTGAAATTCCATTTGATATCTTGTTTAAAGTTAATTCATTGGTTCAGCACGGGTATCTTTCAGGTTCTGGACTTGATAACAATTTCTATCATTTGGTTGATCCGCATAGAGTGAACCTTGAATTTATTGAGCATGCTTTAGAAAAGATGCACTATTCAAAAGATTTTTGTTTTGAACCCACAAGATGGCTGGTTGATCAGTACAAAAGGTACTTGAAATCAAATAATCNACCTNGGTCACCTATGATATCCTTGGATATAGGGTTGGTATATGTACGCAGGGTTCAGATTACACCATGCAAAGTGTACTTTTGTGGTCCAGAGATTAATGTCTCAAATCGCGTTCTCCGCCGTTTCAATAAGCATATCAATAACTTTCTTCGTGTTTCATTTGTTGATGAGGAGTTGGATAATCTGTATTCAACAGATTTATCTTCGCGTATATCTGAGGGCATGAAAACTGAGATATACTATAGAATTCTTTCCATCTTGAGAAATGGCATAATTGTTGGTGATAAGAAGTTTGAATTTCTGGCATTCTCATCGAGTCAGTTGCGGGAAAATTCTCTCTGGATGTTTGCTCCTACAACAACTGGATGTACTGCCGCTCACATAAGGGAATGGATGGGAGATTTTAGCAAGATAAGAAATGTGGCTAAATATGCGGCTAGGCTGGGACAATCTTTTGGTTCATCTACTGAAACTCTAAGTGTCAACNGGAGTGAAATTGAAATTATTCCTGATGTGACGTTTAAACATGGTGGAATNAAATATGTCTTCTCTGATGGAATTGGTAAAATATCTCTTGAATTTGCCAGGAAAGTGGCTCAAAAATGTGGTCATAATTCTACACCATCGGCCTTTCAGATTCGGTATGGCGGGTACAAAGGAGTTGTGGCTGTTGACCCAACCTCATCTGTGAAGTTATCACTGAGGAAGANCATGCACAAATATGATTCAGATAATACCAAATTGGATGTTTTGGCATGTAGTAAGTTCCAGCCTTGTTATCTGAATCGACAATTAATTACTCTTTTATCCACTCTTGGTGTGAGGGATAGTGTTTTTGAGAAAAAGCAAAAAGAAGCTGTTAATCAACTGAACACTATACTAACAGATTCGTTGAAGGCACAAGAGGCTTTGGACTTAATGTCTGCTGGGGAGATCACTAATATTCTGAAGGAGATGCTCAATTGTGGCTACAAGCCTGATGTTGAACCATTTCTTTCAATGATGCTGCAAACATTTAGGGCNTCAAAACTGCTGGATTTGCGACAAAAAACTAGGATATTTATTCCAATGGGAAGAGCAATGATGGGATGCTTAGATGAAACTAGAACCCTGGAATATGGTCAAGTTTTTGTTCATTTTTCTAAAAATGGGTACGGGAGTCTTTCAAAATCTTATATAGTTACAGGTAAGGTAGTAGTAGCAAAAAACCCCTGCTTGTACCCAGGTGATGTGCGTGTTTTGAAGGCTGTGAATGTGCCAGCTTTGCACCACATGGTGGATTGTGTTGTTTTCCCTCAAAAAGGTTTCAGACCACATACAAATGAATGTTCGGGGAGTGATCTGGATGGGGACATTTACTTTGTTTGTTGGGATCCTGAATTGATTCCTCATAAAACAATCGAACCAATGGACTATACTCCTGCCCCAACTACGCAATTGGATCATGATGTGATGATTGAGGAGGTGGAGGAGTATTTTACCAATTACATACTCAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCAGATAGAGAATCTGAAAAGGCAATGTCTGAGNAATGTGTTAAGCTTGCAAAGCTATTCTCAATAGCAGTTGACTTTCCGAAGACCGGTGCCCCGGCTGTTATACCTCCTAAACTTTATGTCAAAGAATATCCAGACTTCATGGAGAAGCCTGACAAACNCACCTATCAGTCGCGTAATGTGATAGGAAAGCTTTTCAGGGAAGTGCAAGGAATTTCAACAAGTGCTGGCTCTATTACATCCTTCACACNGAAAGTGGCTAGACGGTCATATGACTCTGACATGGAAGTCGACGGCTTTATGGATTATGTTGATGATGCTTTCCATCACAAGAGCAACTATGACTACAAGTTGGGGAATCTGATGGACTACTATGGGATCAAAACCGAAGCCGAAATCCTTGGTGGGAATATTATGAAAATGTCAAAATCTTTCACCAAGAGAAGGGACGTGGACGCAATTAACATGGCCGTGAAGTCCCTGAGGAAAGAGGCGAGGACTTGGTTCAATGGTAGCAGTAGCAGTGTAGATTCCGGGACCGATGATGNATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCCAAGTTACTGGGGTTGCTACAATGAAGGAATGGGTAGGGACCATTATATAAGCTTCCCATGGTGTGTTTACCCTCAACTTGTCGAAATCAAGAAGGAGAAAGCCAGGATGAGATATATTGACCTATCCATTGAACAAAGTTTCTGTCATGGGTTGCATATTAACTGAGACAGCTATTGACCCCATGCTTTCAGTAGTCCAGAAGCAGCTTCTGTTTATACTGGTTGACTTTGCATGTACATTTTTATGATAATGTCATAGTATAATGTTGAGTGGATATGGATGTTGTGTCAGTCATTTCCTTTGTATCATTTGTAAATATGATGAAGACTCATTAGTGGTATTAGTTATGGTTTTTCTGTATCTTATTATTTTCATTTTCTTTGTGAGAAATTAGTTGATTTGGAATGAATGGTTTGTAATTTCAAAGCATGGTATTCTTAGGAAAGCATCATAGACTTATTTTATGGAGTAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00790	108962	113744	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003968 RNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000790s00021812.1	PF05183.7	RdRP	194	755	1.70E-202

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.287
SRR1783600	control	3.517
SRR1783602	moderate drought stress	2.990
SRR1811619	moderate drought stress	2.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.705
DRR006520	Root Summer glycyrrhizin high producing strain	9.502
DRR006521	Root Winter glycyrrhizin high producing strain	0.593
DRR006522	Root Winter glycyrrhizin high producing strain	0.817
DRR006523	Root Summer glycyrrhizin low producing strain	12.720
DRR006524	Root Summer glycyrrhizin low producing strain	12.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.188
SRR2868004	Drought Stress (root)	2.483
SRR2967015	Control (root)	2.160

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.668
SRR9715740	Leaf	0.456
SRR9715741	Leaf	0.708
SRR9715739	Root	0.870
SRR9715742	Root	2.753
SRR9715743	Root	2.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.127
SRR8749028	MeJA induced 9h	0.198
SRR8749029	MeJA induced 9h	0.339
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.009

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.732
SRR8400027	Control - Root	3.206