Gene detail information of Glyur000790s00021810 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08980.1 | 1.00E-108 | amidase 1 |
| NR | XP_003556503.1 | 0 | PREDICTED: amidase 1-like isoform X1 [Glycine max] |
| COG | YP_003695504.1 | 9.00E-60 | amidase [Starkeya novella DSM 506] |
| Swissprot | tr|Q9FR37|AMI1_ARATH | 4.00E-140 | Amidase 1 |
| trEMBL | tr|I1NIY1|I1NIY1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00790 | 92616 | 114975 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000790s00021810.1 | PF01425.16 | Amidase | 34 | 183 | 2.40E-41 |
| Glyur000790s00021810.1 | PF01425.16 | Amidase | 331 | 425 | 6.80E-06 |
| Glyur000790s00021810.2 | PF01425.16 | Amidase | 34 | 188 | 2.40E-44 |
| Glyur000790s00021810.3 | PF01425.16 | Amidase | 34 | 183 | 6.70E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.156 |
| SRR1783600 | control | 6.968 |
| SRR1783602 | moderate drought stress | 5.560 |
| SRR1811619 | moderate drought stress | 5.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.033 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.871 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.060 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.877 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.687 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.503 |
| SRR2868004 | Drought Stress (root) | 36.378 |
| SRR2967015 | Control (root) | 46.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.219 |
| SRR9715740 | Leaf | 0.415 |
| SRR9715741 | Leaf | 0.090 |
| SRR9715739 | Root | 2.070 |
| SRR9715742 | Root | 10.586 |
| SRR9715743 | Root | 10.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.954 |
| SRR8400027 | Control - Root | 20.083 |