Gene detail

Gene detail information of Glyur000790s00021806

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39480.1	3.00E-96	cytochrome P450, family 96, subfamily A, polypeptide 9
NR	XP_003554826.1	0	PREDICTED: cytochrome P450 86B1-like [Glycine max]
COG	YP_001865045.1	7.00E-34	cytochrome P450 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9FVS9\|C96AF_ARATH	4.00E-101	Alkane hydroxylase MAH1 {ECO:0000303\|PubMed:17905869}
trEMBL	tr\|I1N5K2\|I1N5K2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G00590.1}

Sequence

Transcript Sequence

>Glyur000790s00021806.1
ATGTTGGAGGACCATTTGCAACAACAAAAGACGGTGTTGGATCTACAAGATGTGTTTTGTCGTTTCACATTCGACAACATATGTTCCATGGTTCTCGGGTATGACCCTAATTGCCTTTCCATTGACCTCCCAGAGGGAGTTGTGTGTGAGAAGGCTTTTAACAAGGCAATGGAGTCCATATTCTACAGACACGTAGTGCCAAAATGTGTTTGGAAGTTGCAAGAGTGGCTTCAGATTGGTCAAGAAAAGAAGATGAAGGAAGCGTGTGAAACATTTGACCAATTCCTCTATGCATGTATAGCATCCAAACGAGAAGAGCTAAGCAATAATAACGAAAGGGTTGGACTTGGAGCTGAAGCTCACGTTGACTTGCTAACAACTTTGATGAGAGAAAAAGTACAACATGATGACAAGTTTCTAAGGGATGTTGCGTTTAATCTTTTTGTAGCTGGGAGAGATACCATAGCTTCAGCTCTTACATGGTTCTTTTGGCTCCTTGCTACAAACCCATCAGTGGAAGCCAAGATTGTTGAAGAGATGAAAGACAATAATTATTATGGGTCCATTAAGCAAGGGGTTTTAGGTGGTTTGGAAAATATGGTTTATCTACATGGTGCTATATGTGAAGCTTTGAGGCTTTTTCCTCCTATACCTTTTGAGAGGAAGCAAGCAATCAAAGAGGATATGCTTCCAAGTGGTCACCATGTTAATCCCAACACGACTATATTGCTTTCTTTGTATGCAATGGGAAGGTTTGAAGAGATTTGGGGGAAGGATTGTTTGGAGTTTAAGCCAGAGAGATGGATCTCTGAGAGAGGAAGGGTTGTTTATGCACCATCTTNTAAGTTTGTTAGCTTTAATGCGGGGCCTAGGACTTGTTTGGGAAAGGACTTGTCCTTTGTTCAAATCAAGATGGTTGTGATTGCTATTTTGCGCAACTATCGCGTCCAGCTTGTGGAGGGTCATCTCGCTACCCCGAGTCTTTCGATTGTACTTCTTATGAAGCATGGTTTGAAGGTCAGGATCNCAAGAAGAGAAATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00790	77424	78467	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP96A9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000790s00021806.1	PF00067.17	p450	7	328	8.10E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.041
SRR1783600	control	3.031
SRR1783602	moderate drought stress	1.052
SRR1811619	moderate drought stress	0.984

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.275
DRR006520	Root Summer glycyrrhizin high producing strain	1.288
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.106
DRR006524	Root Summer glycyrrhizin low producing strain	0.106
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.306

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.810
SRR2868004	Drought Stress (root)	1.628
SRR2967015	Control (root)	1.110

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.588
SRR9715740	Leaf	3.706
SRR9715741	Leaf	2.823
SRR9715739	Root	1.067
SRR9715742	Root	0.875
SRR9715743	Root	0.675

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.061
SRR8749031	Uninduced	0.147
SRR8749032	Uninduced	0.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.761
SRR8400027	Control - Root	2.253