Gene detail information of Glyur000790s00021797 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01730.1 | 0 | cleavage and polyadenylation specificity factor 73 kDa subunit-II |
| NR | XP_004498247.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] |
| COG | NP_276331.1 | 8.00E-58 | cleavage and polyadenylation specificity factor [Methanothermobacter thermautotrophicus str. Delta H] |
| Swissprot | tr|Q8GUU3|CPS3B_ARATH | 0 | Cleavage and polyadenylation specificity factor subunit 3-II |
| trEMBL | tr|A0A072VR63|A0A072VR63_MEDTR | 0 | Cleavage and polyadenylation specificity factor, putative {ECO:0000313|EMBL:KEH40630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00790 | 23656 | 34123 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000790s00021797.1 | PF00753.22 | Lactamase_B | 12 | 142 | 5.70E-12 |
| Glyur000790s00021797.1 | PF10996.3 | Beta-Casp | 258 | 376 | 1.30E-27 |
| Glyur000790s00021797.1 | PF07521.7 | RMMBL | 384 | 419 | 6.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.815 |
| SRR1783600 | control | 3.858 |
| SRR1783602 | moderate drought stress | 5.112 |
| SRR1811619 | moderate drought stress | 5.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.093 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.950 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.133 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.986 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.213 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.176 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.208 |
| SRR2868004 | Drought Stress (root) | 3.841 |
| SRR2967015 | Control (root) | 4.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.284 |
| SRR9715740 | Leaf | 2.295 |
| SRR9715741 | Leaf | 2.594 |
| SRR9715739 | Root | 1.158 |
| SRR9715742 | Root | 4.106 |
| SRR9715743 | Root | 4.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.596 |
| SRR8749028 | MeJA induced 9h | 4.439 |
| SRR8749029 | MeJA induced 9h | 3.788 |
| SRR8749030 | Uninduced | 0.543 |
| SRR8749031 | Uninduced | 0.139 |
| SRR8749032 | Uninduced | 0.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.882 |
| SRR8400027 | Control - Root | 7.828 |